Strain Fitness in Escherichia coli BL21 around ECD_00843

Experiment: Bas33

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00841 and ECD_00842 overlap by 4 nucleotidesECD_00842 and ECD_00843 overlap by 14 nucleotidesECD_00843 and ECD_00844 overlap by 8 nucleotidesECD_00844 and ECD_00845 overlap by 4 nucleotides ECD_00841: ECD_00841 - hypothetical protein, at 885,781 to 886,602 _00841 ECD_00842: ECD_00842 - phage baseplate assembly protein, at 886,599 to 886,958 _00842 ECD_00843: ECD_00843 - phage baseplate assembly protein, at 886,945 to 887,853 _00843 ECD_00844: ECD_00844 - putative phage tail protein, at 887,846 to 888,451 _00844 ECD_00845: ECD_00845 - hypothetical protein, at 888,448 to 890,070 _00845 Position (kb) 886 887 888Strain fitness (log2 ratio) -1 0 1at 886.017 kb on + strand, within ECD_00841at 886.017 kb on + strand, within ECD_00841at 886.017 kb on + strand, within ECD_00841at 886.023 kb on + strand, within ECD_00841at 886.076 kb on + strand, within ECD_00841at 886.082 kb on + strand, within ECD_00841at 886.082 kb on + strand, within ECD_00841at 886.274 kb on - strand, within ECD_00841at 886.375 kb on + strand, within ECD_00841at 886.471 kb on - strand, within ECD_00841at 886.625 kb on + strandat 886.798 kb on - strand, within ECD_00842at 886.798 kb on - strand, within ECD_00842at 887.230 kb on + strand, within ECD_00843at 887.230 kb on + strand, within ECD_00843at 887.230 kb on + strand, within ECD_00843at 887.231 kb on - strand, within ECD_00843at 887.231 kb on - strand, within ECD_00843at 887.814 kb on + strandat 888.065 kb on + strand, within ECD_00844at 888.220 kb on + strand, within ECD_00844at 888.220 kb on + strand, within ECD_00844at 888.225 kb on - strand, within ECD_00844at 888.225 kb on - strand, within ECD_00844at 888.336 kb on - strand, within ECD_00844at 888.336 kb on - strand, within ECD_00844at 888.359 kb on + strand, within ECD_00844at 888.365 kb on + strand, within ECD_00844at 888.637 kb on + strand, within ECD_00845at 888.775 kb on + strand, within ECD_00845at 888.777 kb on + strand, within ECD_00845at 888.852 kb on + strand, within ECD_00845

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas33
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886,017 + ECD_00841 0.29 -0.2
886,017 + ECD_00841 0.29 -0.0
886,017 + ECD_00841 0.29 +0.9
886,023 + ECD_00841 0.29 -1.0
886,076 + ECD_00841 0.36 -0.2
886,082 + ECD_00841 0.37 +0.1
886,082 + ECD_00841 0.37 +0.7
886,274 - ECD_00841 0.60 +0.7
886,375 + ECD_00841 0.72 -0.7
886,471 - ECD_00841 0.84 -0.3
886,625 + +0.1
886,798 - ECD_00842 0.55 +0.8
886,798 - ECD_00842 0.55 +0.5
887,230 + ECD_00843 0.31 +0.4
887,230 + ECD_00843 0.31 -1.1
887,230 + ECD_00843 0.31 -0.9
887,231 - ECD_00843 0.31 -1.2
887,231 - ECD_00843 0.31 -1.1
887,814 + -0.3
888,065 + ECD_00844 0.36 +0.9
888,220 + ECD_00844 0.62 +0.6
888,220 + ECD_00844 0.62 +1.3
888,225 - ECD_00844 0.63 +0.7
888,225 - ECD_00844 0.63 +0.7
888,336 - ECD_00844 0.81 +0.4
888,336 - ECD_00844 0.81 +0.8
888,359 + ECD_00844 0.85 +0.1
888,365 + ECD_00844 0.86 +0.4
888,637 + ECD_00845 0.12 +0.4
888,775 + ECD_00845 0.20 -0.0
888,777 + ECD_00845 0.20 -0.2
888,852 + ECD_00845 0.25 -0.8

Or see this region's nucleotide sequence