Experiment: Bas33
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00841 and ECD_00842 overlap by 4 nucleotides ECD_00842 and ECD_00843 overlap by 14 nucleotides ECD_00843 and ECD_00844 overlap by 8 nucleotides ECD_00844 and ECD_00845 overlap by 4 nucleotides
ECD_00841: ECD_00841 - hypothetical protein, at 885,781 to 886,602
_00841
ECD_00842: ECD_00842 - phage baseplate assembly protein, at 886,599 to 886,958
_00842
ECD_00843: ECD_00843 - phage baseplate assembly protein, at 886,945 to 887,853
_00843
ECD_00844: ECD_00844 - putative phage tail protein, at 887,846 to 888,451
_00844
ECD_00845: ECD_00845 - hypothetical protein, at 888,448 to 890,070
_00845
Position (kb) 886
887
888 Strain fitness (log2 ratio) -1
0
1 at 886.017 kb on + strand, within ECD_00841 at 886.017 kb on + strand, within ECD_00841 at 886.017 kb on + strand, within ECD_00841 at 886.023 kb on + strand, within ECD_00841 at 886.076 kb on + strand, within ECD_00841 at 886.082 kb on + strand, within ECD_00841 at 886.082 kb on + strand, within ECD_00841 at 886.274 kb on - strand, within ECD_00841 at 886.375 kb on + strand, within ECD_00841 at 886.471 kb on - strand, within ECD_00841 at 886.625 kb on + strand at 886.798 kb on - strand, within ECD_00842 at 886.798 kb on - strand, within ECD_00842 at 887.230 kb on + strand, within ECD_00843 at 887.230 kb on + strand, within ECD_00843 at 887.230 kb on + strand, within ECD_00843 at 887.231 kb on - strand, within ECD_00843 at 887.231 kb on - strand, within ECD_00843 at 887.814 kb on + strand at 888.065 kb on + strand, within ECD_00844 at 888.220 kb on + strand, within ECD_00844 at 888.220 kb on + strand, within ECD_00844 at 888.225 kb on - strand, within ECD_00844 at 888.225 kb on - strand, within ECD_00844 at 888.336 kb on - strand, within ECD_00844 at 888.336 kb on - strand, within ECD_00844 at 888.359 kb on + strand, within ECD_00844 at 888.365 kb on + strand, within ECD_00844 at 888.637 kb on + strand, within ECD_00845 at 888.775 kb on + strand, within ECD_00845 at 888.777 kb on + strand, within ECD_00845 at 888.852 kb on + strand, within ECD_00845
Per-strain Table
Position Strand Gene LocusTag Fraction Bas33 remove 886,017 + ECD_00841 0.29 -0.2 886,017 + ECD_00841 0.29 -0.0 886,017 + ECD_00841 0.29 +0.9 886,023 + ECD_00841 0.29 -1.0 886,076 + ECD_00841 0.36 -0.2 886,082 + ECD_00841 0.37 +0.1 886,082 + ECD_00841 0.37 +0.7 886,274 - ECD_00841 0.60 +0.7 886,375 + ECD_00841 0.72 -0.7 886,471 - ECD_00841 0.84 -0.3 886,625 + +0.1 886,798 - ECD_00842 0.55 +0.8 886,798 - ECD_00842 0.55 +0.5 887,230 + ECD_00843 0.31 +0.4 887,230 + ECD_00843 0.31 -1.1 887,230 + ECD_00843 0.31 -0.9 887,231 - ECD_00843 0.31 -1.2 887,231 - ECD_00843 0.31 -1.1 887,814 + -0.3 888,065 + ECD_00844 0.36 +0.9 888,220 + ECD_00844 0.62 +0.6 888,220 + ECD_00844 0.62 +1.3 888,225 - ECD_00844 0.63 +0.7 888,225 - ECD_00844 0.63 +0.7 888,336 - ECD_00844 0.81 +0.4 888,336 - ECD_00844 0.81 +0.8 888,359 + ECD_00844 0.85 +0.1 888,365 + ECD_00844 0.86 +0.4 888,637 + ECD_00845 0.12 +0.4 888,775 + ECD_00845 0.20 -0.0 888,777 + ECD_00845 0.20 -0.2 888,852 + ECD_00845 0.25 -0.8
Or see this region's nucleotide sequence