Experiment: Bas33
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00801 and ECD_00802 are separated by 46 nucleotides ECD_00802 and ECD_00803 are separated by 212 nucleotides ECD_00803 and ECD_00804 are separated by 110 nucleotides
ECD_00801: ECD_00801 - putative membrane-anchored diguanylate cyclase, at 859,254 to 860,582
_00801
ECD_00802: ECD_00802 - ribosomal protein S12 methylthiotransferase, at 860,629 to 861,954
_00802
ECD_00803: ECD_00803 - repressor of biofilm formation by indole transport regulation, at 862,167 to 862,550
_00803
ECD_00804: ECD_00804 - soluble aldose sugar dehydrogenase, at 862,661 to 863,776
_00804
Position (kb) 860
861
862 Strain fitness (log2 ratio) -1
0
1 at 860.054 kb on + strand, within ECD_00801 at 860.123 kb on + strand, within ECD_00801 at 861.472 kb on - strand, within ECD_00802 at 861.775 kb on + strand, within ECD_00802 at 861.790 kb on - strand, within ECD_00802 at 861.830 kb on + strand at 861.944 kb on - strand at 862.127 kb on + strand at 862.128 kb on - strand at 862.128 kb on - strand at 862.292 kb on - strand, within ECD_00803 at 862.498 kb on + strand, within ECD_00803 at 862.693 kb on + strand at 862.734 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas33 remove 860,054 + ECD_00801 0.60 +1.2 860,123 + ECD_00801 0.65 -0.3 861,472 - ECD_00802 0.64 -1.2 861,775 + ECD_00802 0.86 -0.3 861,790 - ECD_00802 0.88 -0.1 861,830 + +0.3 861,944 - -0.3 862,127 + +0.0 862,128 - +0.6 862,128 - -0.4 862,292 - ECD_00803 0.33 -0.5 862,498 + ECD_00803 0.86 +0.1 862,693 + +1.2 862,734 + +0.4
Or see this region's nucleotide sequence