Experiment: Bas33
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00676 and ECD_00677 overlap by 4 nucleotides ECD_00677 and ECD_00678 are separated by 14 nucleotides
ECD_00676: ECD_00676 - putative fimbrial protein, at 706,485 to 707,546
_00676
ECD_00677: ECD_00677 - putative periplasmic pilin chaperone, at 707,543 to 708,274
_00677
ECD_00678: ECD_00678 - putative outer membrane protein, at 708,289 to 710,739
_00678
Position (kb) 707
708
709 Strain fitness (log2 ratio) -1
0
1 at 706.638 kb on - strand, within ECD_00676 at 706.929 kb on - strand, within ECD_00676 at 706.999 kb on + strand, within ECD_00676 at 707.000 kb on - strand, within ECD_00676 at 707.021 kb on - strand, within ECD_00676 at 707.158 kb on + strand, within ECD_00676 at 707.159 kb on - strand, within ECD_00676 at 707.261 kb on - strand, within ECD_00676 at 707.261 kb on - strand, within ECD_00676 at 707.303 kb on - strand, within ECD_00676 at 707.626 kb on + strand, within ECD_00677 at 707.627 kb on - strand, within ECD_00677 at 707.627 kb on - strand, within ECD_00677 at 707.951 kb on - strand, within ECD_00677 at 708.008 kb on + strand, within ECD_00677 at 708.051 kb on - strand, within ECD_00677 at 708.115 kb on - strand, within ECD_00677 at 708.123 kb on + strand, within ECD_00677 at 708.191 kb on - strand, within ECD_00677 at 708.210 kb on - strand at 708.331 kb on - strand at 708.622 kb on + strand, within ECD_00678 at 708.659 kb on + strand, within ECD_00678 at 708.979 kb on - strand, within ECD_00678 at 708.981 kb on + strand, within ECD_00678 at 708.996 kb on + strand, within ECD_00678 at 709.135 kb on - strand, within ECD_00678 at 709.185 kb on + strand, within ECD_00678
Per-strain Table
Position Strand Gene LocusTag Fraction Bas33 remove 706,638 - ECD_00676 0.14 -0.7 706,929 - ECD_00676 0.42 +0.7 706,999 + ECD_00676 0.48 -1.1 707,000 - ECD_00676 0.48 +0.2 707,021 - ECD_00676 0.50 -0.7 707,158 + ECD_00676 0.63 +0.5 707,159 - ECD_00676 0.63 -0.2 707,261 - ECD_00676 0.73 -0.4 707,261 - ECD_00676 0.73 -0.4 707,303 - ECD_00676 0.77 +1.1 707,626 + ECD_00677 0.11 +0.3 707,627 - ECD_00677 0.11 +1.1 707,627 - ECD_00677 0.11 +0.7 707,951 - ECD_00677 0.56 +0.4 708,008 + ECD_00677 0.64 +0.5 708,051 - ECD_00677 0.69 +0.9 708,115 - ECD_00677 0.78 -1.3 708,123 + ECD_00677 0.79 +1.0 708,191 - ECD_00677 0.89 +0.6 708,210 - -0.7 708,331 - +0.6 708,622 + ECD_00678 0.14 +0.6 708,659 + ECD_00678 0.15 +0.6 708,979 - ECD_00678 0.28 -0.1 708,981 + ECD_00678 0.28 -0.5 708,996 + ECD_00678 0.29 +1.3 709,135 - ECD_00678 0.35 -0.7 709,185 + ECD_00678 0.37 +0.4
Or see this region's nucleotide sequence