Strain Fitness in Escherichia coli BL21 around ECD_00579

Experiment: Bas33

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_00577 and ECD_00578 are separated by 230 nucleotidesECD_00578 and ECD_00579 are separated by 229 nucleotidesECD_00579 and ECD_00580 are separated by 113 nucleotides ECD_00577: ECD_00577 - putative Zn-dependent NAD(P)-binding oxidoreductase, at 601,918 to 603,156 _00577 ECD_00578: ECD_00578 - regulator of nucleoside diphosphate kinase, at 603,387 to 603,797 _00578 ECD_00579: ECD_00579 - ribonuclease I, at 604,027 to 604,833 _00579 ECD_00580: ECD_00580 - citrate/succinate antiporter; citrate carrier, at 604,947 to 606,410 _00580 Position (kb) 604 605Strain fitness (log2 ratio) -2 -1 0 1 2at 603.125 kb on + strandat 603.125 kb on + strandat 603.152 kb on + strandat 603.153 kb on - strandat 603.223 kb on + strandat 603.389 kb on - strandat 603.548 kb on + strand, within ECD_00578at 603.568 kb on + strand, within ECD_00578at 603.782 kb on + strandat 603.782 kb on + strandat 603.783 kb on - strandat 603.835 kb on + strandat 603.836 kb on - strandat 603.842 kb on - strandat 603.881 kb on - strandat 603.896 kb on - strandat 603.963 kb on - strandat 603.963 kb on - strandat 603.967 kb on - strandat 603.990 kb on - strandat 604.068 kb on + strandat 604.069 kb on - strandat 604.158 kb on - strand, within ECD_00579at 604.181 kb on - strand, within ECD_00579at 604.186 kb on - strand, within ECD_00579at 604.263 kb on - strand, within ECD_00579at 604.319 kb on - strand, within ECD_00579at 604.319 kb on - strand, within ECD_00579at 604.335 kb on - strand, within ECD_00579at 604.604 kb on - strand, within ECD_00579at 604.724 kb on + strand, within ECD_00579at 604.724 kb on + strand, within ECD_00579at 604.725 kb on - strand, within ECD_00579at 604.743 kb on - strand, within ECD_00579at 604.852 kb on - strandat 604.852 kb on - strandat 604.856 kb on - strandat 604.856 kb on - strandat 604.856 kb on - strandat 604.856 kb on - strandat 604.865 kb on - strandat 604.868 kb on - strandat 604.868 kb on - strandat 604.948 kb on + strandat 604.949 kb on - strandat 604.992 kb on - strandat 604.999 kb on + strandat 605.062 kb on + strandat 605.063 kb on - strandat 605.155 kb on - strand, within ECD_00580at 605.165 kb on + strand, within ECD_00580at 605.166 kb on - strand, within ECD_00580at 605.234 kb on - strand, within ECD_00580at 605.234 kb on - strand, within ECD_00580at 605.234 kb on - strand, within ECD_00580at 605.234 kb on - strand, within ECD_00580at 605.246 kb on - strand, within ECD_00580at 605.303 kb on + strand, within ECD_00580at 605.405 kb on + strand, within ECD_00580at 605.529 kb on + strand, within ECD_00580at 605.530 kb on - strand, within ECD_00580at 605.530 kb on - strand, within ECD_00580at 605.530 kb on - strand, within ECD_00580at 605.666 kb on + strand, within ECD_00580at 605.666 kb on + strand, within ECD_00580at 605.667 kb on - strand, within ECD_00580at 605.810 kb on + strand, within ECD_00580at 605.811 kb on - strand, within ECD_00580

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas33
remove
603,125 + -0.2
603,125 + +0.6
603,152 + -0.2
603,153 - -2.0
603,223 + -0.3
603,389 - +0.2
603,548 + ECD_00578 0.39 +1.3
603,568 + ECD_00578 0.44 -0.5
603,782 + +0.5
603,782 + +0.8
603,783 - +0.8
603,835 + +0.7
603,836 - -0.2
603,842 - +0.5
603,881 - -0.2
603,896 - -0.2
603,963 - +0.3
603,963 - +0.8
603,967 - +0.0
603,990 - +0.8
604,068 + +0.4
604,069 - -0.5
604,158 - ECD_00579 0.16 -0.4
604,181 - ECD_00579 0.19 +0.3
604,186 - ECD_00579 0.20 -0.0
604,263 - ECD_00579 0.29 -0.6
604,319 - ECD_00579 0.36 -0.4
604,319 - ECD_00579 0.36 -1.1
604,335 - ECD_00579 0.38 -0.6
604,604 - ECD_00579 0.71 +0.7
604,724 + ECD_00579 0.86 +0.3
604,724 + ECD_00579 0.86 -0.6
604,725 - ECD_00579 0.86 -0.5
604,743 - ECD_00579 0.89 -0.7
604,852 - +0.0
604,852 - +0.4
604,856 - +0.1
604,856 - +1.9
604,856 - +1.1
604,856 - -0.3
604,865 - +0.1
604,868 - -0.5
604,868 - -0.1
604,948 + +0.1
604,949 - -0.2
604,992 - -0.4
604,999 + -0.6
605,062 + +0.8
605,063 - +0.2
605,155 - ECD_00580 0.14 -0.1
605,165 + ECD_00580 0.15 -0.3
605,166 - ECD_00580 0.15 +0.2
605,234 - ECD_00580 0.20 -0.8
605,234 - ECD_00580 0.20 +0.4
605,234 - ECD_00580 0.20 +0.3
605,234 - ECD_00580 0.20 -0.7
605,246 - ECD_00580 0.20 +1.4
605,303 + ECD_00580 0.24 -0.6
605,405 + ECD_00580 0.31 -0.1
605,529 + ECD_00580 0.40 -0.1
605,530 - ECD_00580 0.40 +0.1
605,530 - ECD_00580 0.40 +1.2
605,530 - ECD_00580 0.40 +0.1
605,666 + ECD_00580 0.49 -0.4
605,666 + ECD_00580 0.49 -0.9
605,667 - ECD_00580 0.49 +0.5
605,810 + ECD_00580 0.59 +0.7
605,811 - ECD_00580 0.59 -0.1

Or see this region's nucleotide sequence