Experiment: Bas33
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00577 and ECD_00578 are separated by 230 nucleotides ECD_00578 and ECD_00579 are separated by 229 nucleotides ECD_00579 and ECD_00580 are separated by 113 nucleotides
ECD_00577: ECD_00577 - putative Zn-dependent NAD(P)-binding oxidoreductase, at 601,918 to 603,156
_00577
ECD_00578: ECD_00578 - regulator of nucleoside diphosphate kinase, at 603,387 to 603,797
_00578
ECD_00579: ECD_00579 - ribonuclease I, at 604,027 to 604,833
_00579
ECD_00580: ECD_00580 - citrate/succinate antiporter; citrate carrier, at 604,947 to 606,410
_00580
Position (kb) 604
605 Strain fitness (log2 ratio) -2
-1
0
1
2 at 603.125 kb on + strand at 603.125 kb on + strand at 603.152 kb on + strand at 603.153 kb on - strand at 603.223 kb on + strand at 603.389 kb on - strand at 603.548 kb on + strand, within ECD_00578 at 603.568 kb on + strand, within ECD_00578 at 603.782 kb on + strand at 603.782 kb on + strand at 603.783 kb on - strand at 603.835 kb on + strand at 603.836 kb on - strand at 603.842 kb on - strand at 603.881 kb on - strand at 603.896 kb on - strand at 603.963 kb on - strand at 603.963 kb on - strand at 603.967 kb on - strand at 603.990 kb on - strand at 604.068 kb on + strand at 604.069 kb on - strand at 604.158 kb on - strand, within ECD_00579 at 604.181 kb on - strand, within ECD_00579 at 604.186 kb on - strand, within ECD_00579 at 604.263 kb on - strand, within ECD_00579 at 604.319 kb on - strand, within ECD_00579 at 604.319 kb on - strand, within ECD_00579 at 604.335 kb on - strand, within ECD_00579 at 604.604 kb on - strand, within ECD_00579 at 604.724 kb on + strand, within ECD_00579 at 604.724 kb on + strand, within ECD_00579 at 604.725 kb on - strand, within ECD_00579 at 604.743 kb on - strand, within ECD_00579 at 604.852 kb on - strand at 604.852 kb on - strand at 604.856 kb on - strand at 604.856 kb on - strand at 604.856 kb on - strand at 604.856 kb on - strand at 604.865 kb on - strand at 604.868 kb on - strand at 604.868 kb on - strand at 604.948 kb on + strand at 604.949 kb on - strand at 604.992 kb on - strand at 604.999 kb on + strand at 605.062 kb on + strand at 605.063 kb on - strand at 605.155 kb on - strand, within ECD_00580 at 605.165 kb on + strand, within ECD_00580 at 605.166 kb on - strand, within ECD_00580 at 605.234 kb on - strand, within ECD_00580 at 605.234 kb on - strand, within ECD_00580 at 605.234 kb on - strand, within ECD_00580 at 605.234 kb on - strand, within ECD_00580 at 605.246 kb on - strand, within ECD_00580 at 605.303 kb on + strand, within ECD_00580 at 605.405 kb on + strand, within ECD_00580 at 605.529 kb on + strand, within ECD_00580 at 605.530 kb on - strand, within ECD_00580 at 605.530 kb on - strand, within ECD_00580 at 605.530 kb on - strand, within ECD_00580 at 605.666 kb on + strand, within ECD_00580 at 605.666 kb on + strand, within ECD_00580 at 605.667 kb on - strand, within ECD_00580 at 605.810 kb on + strand, within ECD_00580 at 605.811 kb on - strand, within ECD_00580
Per-strain Table
Position Strand Gene LocusTag Fraction Bas33 remove 603,125 + -0.2 603,125 + +0.6 603,152 + -0.2 603,153 - -2.0 603,223 + -0.3 603,389 - +0.2 603,548 + ECD_00578 0.39 +1.3 603,568 + ECD_00578 0.44 -0.5 603,782 + +0.5 603,782 + +0.8 603,783 - +0.8 603,835 + +0.7 603,836 - -0.2 603,842 - +0.5 603,881 - -0.2 603,896 - -0.2 603,963 - +0.3 603,963 - +0.8 603,967 - +0.0 603,990 - +0.8 604,068 + +0.4 604,069 - -0.5 604,158 - ECD_00579 0.16 -0.4 604,181 - ECD_00579 0.19 +0.3 604,186 - ECD_00579 0.20 -0.0 604,263 - ECD_00579 0.29 -0.6 604,319 - ECD_00579 0.36 -0.4 604,319 - ECD_00579 0.36 -1.1 604,335 - ECD_00579 0.38 -0.6 604,604 - ECD_00579 0.71 +0.7 604,724 + ECD_00579 0.86 +0.3 604,724 + ECD_00579 0.86 -0.6 604,725 - ECD_00579 0.86 -0.5 604,743 - ECD_00579 0.89 -0.7 604,852 - +0.0 604,852 - +0.4 604,856 - +0.1 604,856 - +1.9 604,856 - +1.1 604,856 - -0.3 604,865 - +0.1 604,868 - -0.5 604,868 - -0.1 604,948 + +0.1 604,949 - -0.2 604,992 - -0.4 604,999 + -0.6 605,062 + +0.8 605,063 - +0.2 605,155 - ECD_00580 0.14 -0.1 605,165 + ECD_00580 0.15 -0.3 605,166 - ECD_00580 0.15 +0.2 605,234 - ECD_00580 0.20 -0.8 605,234 - ECD_00580 0.20 +0.4 605,234 - ECD_00580 0.20 +0.3 605,234 - ECD_00580 0.20 -0.7 605,246 - ECD_00580 0.20 +1.4 605,303 + ECD_00580 0.24 -0.6 605,405 + ECD_00580 0.31 -0.1 605,529 + ECD_00580 0.40 -0.1 605,530 - ECD_00580 0.40 +0.1 605,530 - ECD_00580 0.40 +1.2 605,530 - ECD_00580 0.40 +0.1 605,666 + ECD_00580 0.49 -0.4 605,666 + ECD_00580 0.49 -0.9 605,667 - ECD_00580 0.49 +0.5 605,810 + ECD_00580 0.59 +0.7 605,811 - ECD_00580 0.59 -0.1
Or see this region's nucleotide sequence