Strain Fitness in Escherichia coli BL21 around ECD_00271

Experiment: Bas33

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00270 and ECD_00271 are separated by 874 nucleotidesECD_00271 and ECD_00272 are separated by 41 nucleotides ECD_00270: ECD_00270 - choline transporter of high affinity, at 299,091 to 301,124 _00270 ECD_00271: ECD_00271 - c-di-GMP-specific phosphodiesterase, at 301,999 to 303,087 _00271 ECD_00272: ECD_00272 - putative DNA-bindng transcriptional regulator, at 303,129 to 304,061 _00272 Position (kb) 301 302 303 304Strain fitness (log2 ratio) -1 0 1at 301.070 kb on + strandat 301.071 kb on - strandat 301.129 kb on + strandat 301.190 kb on - strandat 301.190 kb on - strandat 301.192 kb on - strandat 301.212 kb on - strandat 301.557 kb on + strandat 301.662 kb on + strandat 301.897 kb on + strandat 301.897 kb on + strandat 301.898 kb on - strandat 301.901 kb on + strandat 301.901 kb on + strandat 301.932 kb on + strandat 301.932 kb on + strandat 302.133 kb on - strand, within ECD_00271at 302.218 kb on - strand, within ECD_00271at 302.290 kb on + strand, within ECD_00271at 302.655 kb on + strand, within ECD_00271at 302.769 kb on + strand, within ECD_00271at 302.810 kb on - strand, within ECD_00271at 302.810 kb on - strand, within ECD_00271at 302.815 kb on + strand, within ECD_00271at 302.911 kb on - strand, within ECD_00271at 302.929 kb on - strand, within ECD_00271at 303.243 kb on + strand, within ECD_00272at 303.244 kb on - strand, within ECD_00272at 303.462 kb on - strand, within ECD_00272at 303.464 kb on + strand, within ECD_00272at 303.465 kb on - strand, within ECD_00272at 303.467 kb on + strand, within ECD_00272at 303.571 kb on + strand, within ECD_00272at 303.572 kb on - strand, within ECD_00272at 303.632 kb on + strand, within ECD_00272at 303.783 kb on + strand, within ECD_00272at 303.784 kb on - strand, within ECD_00272at 303.784 kb on - strand, within ECD_00272at 303.797 kb on + strand, within ECD_00272at 303.935 kb on + strand, within ECD_00272at 303.949 kb on + strand, within ECD_00272at 303.950 kb on - strand, within ECD_00272at 303.950 kb on - strand, within ECD_00272at 303.950 kb on - strand, within ECD_00272at 303.950 kb on - strand, within ECD_00272

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas33
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301,070 + -0.2
301,071 - +1.4
301,129 + -0.3
301,190 - +0.0
301,190 - +1.4
301,192 - -0.1
301,212 - +0.2
301,557 + +0.2
301,662 + -0.8
301,897 + -0.1
301,897 + -0.0
301,898 - +0.4
301,901 + +0.5
301,901 + +0.7
301,932 + +0.1
301,932 + +0.1
302,133 - ECD_00271 0.12 -0.9
302,218 - ECD_00271 0.20 -1.3
302,290 + ECD_00271 0.27 -0.8
302,655 + ECD_00271 0.60 -0.9
302,769 + ECD_00271 0.71 -0.2
302,810 - ECD_00271 0.74 +0.5
302,810 - ECD_00271 0.74 -0.9
302,815 + ECD_00271 0.75 -0.6
302,911 - ECD_00271 0.84 -0.2
302,929 - ECD_00271 0.85 -0.7
303,243 + ECD_00272 0.12 +1.1
303,244 - ECD_00272 0.12 -0.6
303,462 - ECD_00272 0.36 +0.8
303,464 + ECD_00272 0.36 +1.3
303,465 - ECD_00272 0.36 -0.8
303,467 + ECD_00272 0.36 -0.8
303,571 + ECD_00272 0.47 -0.2
303,572 - ECD_00272 0.47 +0.3
303,632 + ECD_00272 0.54 -0.7
303,783 + ECD_00272 0.70 +0.6
303,784 - ECD_00272 0.70 +0.5
303,784 - ECD_00272 0.70 +0.1
303,797 + ECD_00272 0.72 -0.4
303,935 + ECD_00272 0.86 -0.6
303,949 + ECD_00272 0.88 -0.5
303,950 - ECD_00272 0.88 -0.2
303,950 - ECD_00272 0.88 -0.6
303,950 - ECD_00272 0.88 +0.9
303,950 - ECD_00272 0.88 +0.2

Or see this region's nucleotide sequence