Experiment: Bas33
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00270 and ECD_00271 are separated by 874 nucleotides ECD_00271 and ECD_00272 are separated by 41 nucleotides
ECD_00270: ECD_00270 - choline transporter of high affinity, at 299,091 to 301,124
_00270
ECD_00271: ECD_00271 - c-di-GMP-specific phosphodiesterase, at 301,999 to 303,087
_00271
ECD_00272: ECD_00272 - putative DNA-bindng transcriptional regulator, at 303,129 to 304,061
_00272
Position (kb) 301
302
303
304 Strain fitness (log2 ratio) -1
0
1 at 301.070 kb on + strand at 301.071 kb on - strand at 301.129 kb on + strand at 301.190 kb on - strand at 301.190 kb on - strand at 301.192 kb on - strand at 301.212 kb on - strand at 301.557 kb on + strand at 301.662 kb on + strand at 301.897 kb on + strand at 301.897 kb on + strand at 301.898 kb on - strand at 301.901 kb on + strand at 301.901 kb on + strand at 301.932 kb on + strand at 301.932 kb on + strand at 302.133 kb on - strand, within ECD_00271 at 302.218 kb on - strand, within ECD_00271 at 302.290 kb on + strand, within ECD_00271 at 302.655 kb on + strand, within ECD_00271 at 302.769 kb on + strand, within ECD_00271 at 302.810 kb on - strand, within ECD_00271 at 302.810 kb on - strand, within ECD_00271 at 302.815 kb on + strand, within ECD_00271 at 302.911 kb on - strand, within ECD_00271 at 302.929 kb on - strand, within ECD_00271 at 303.243 kb on + strand, within ECD_00272 at 303.244 kb on - strand, within ECD_00272 at 303.462 kb on - strand, within ECD_00272 at 303.464 kb on + strand, within ECD_00272 at 303.465 kb on - strand, within ECD_00272 at 303.467 kb on + strand, within ECD_00272 at 303.571 kb on + strand, within ECD_00272 at 303.572 kb on - strand, within ECD_00272 at 303.632 kb on + strand, within ECD_00272 at 303.783 kb on + strand, within ECD_00272 at 303.784 kb on - strand, within ECD_00272 at 303.784 kb on - strand, within ECD_00272 at 303.797 kb on + strand, within ECD_00272 at 303.935 kb on + strand, within ECD_00272 at 303.949 kb on + strand, within ECD_00272 at 303.950 kb on - strand, within ECD_00272 at 303.950 kb on - strand, within ECD_00272 at 303.950 kb on - strand, within ECD_00272 at 303.950 kb on - strand, within ECD_00272
Per-strain Table
Position Strand Gene LocusTag Fraction Bas33 remove 301,070 + -0.2 301,071 - +1.4 301,129 + -0.3 301,190 - +0.0 301,190 - +1.4 301,192 - -0.1 301,212 - +0.2 301,557 + +0.2 301,662 + -0.8 301,897 + -0.1 301,897 + -0.0 301,898 - +0.4 301,901 + +0.5 301,901 + +0.7 301,932 + +0.1 301,932 + +0.1 302,133 - ECD_00271 0.12 -0.9 302,218 - ECD_00271 0.20 -1.3 302,290 + ECD_00271 0.27 -0.8 302,655 + ECD_00271 0.60 -0.9 302,769 + ECD_00271 0.71 -0.2 302,810 - ECD_00271 0.74 +0.5 302,810 - ECD_00271 0.74 -0.9 302,815 + ECD_00271 0.75 -0.6 302,911 - ECD_00271 0.84 -0.2 302,929 - ECD_00271 0.85 -0.7 303,243 + ECD_00272 0.12 +1.1 303,244 - ECD_00272 0.12 -0.6 303,462 - ECD_00272 0.36 +0.8 303,464 + ECD_00272 0.36 +1.3 303,465 - ECD_00272 0.36 -0.8 303,467 + ECD_00272 0.36 -0.8 303,571 + ECD_00272 0.47 -0.2 303,572 - ECD_00272 0.47 +0.3 303,632 + ECD_00272 0.54 -0.7 303,783 + ECD_00272 0.70 +0.6 303,784 - ECD_00272 0.70 +0.5 303,784 - ECD_00272 0.70 +0.1 303,797 + ECD_00272 0.72 -0.4 303,935 + ECD_00272 0.86 -0.6 303,949 + ECD_00272 0.88 -0.5 303,950 - ECD_00272 0.88 -0.2 303,950 - ECD_00272 0.88 -0.6 303,950 - ECD_00272 0.88 +0.9 303,950 - ECD_00272 0.88 +0.2
Or see this region's nucleotide sequence