Experiment: Bas33
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00228 and ECD_00229 are separated by 9 nucleotides ECD_00229 and ECD_00230 are separated by 233 nucleotides ECD_00230 and ECD_00231 overlap by 32 nucleotides ECD_00231 and ECD_00232 are separated by 56 nucleotides
ECD_00228: ECD_00228 - mRNA interferase toxin of the YafO-YafN toxin-antitoxin system, at 256,867 to 257,265
_00228
ECD_00229: ECD_00229 - GNAT family putative N-acetyltransferase, at 257,275 to 257,727
_00229
ECD_00230: ECD_00230 - hypothetical protein, at 257,961 to 258,227
_00230
ECD_00231: ECD_00231 - peptide chain release factor 2, at 258,196 to 258,696
_00231
ECD_00232: ECD_00232 - aminoacyl-histidine dipeptidase (peptidase D), at 258,753 to 260,210
_00232
Position (kb) 258
259 Strain fitness (log2 ratio) -2
-1
0
1 at 257.516 kb on + strand, within ECD_00229 at 257.958 kb on + strand at 257.970 kb on + strand at 258.061 kb on + strand, within ECD_00230 at 258.062 kb on - strand, within ECD_00230 at 258.279 kb on - strand, within ECD_00231 at 258.301 kb on - strand, within ECD_00231 at 258.375 kb on + strand, within ECD_00231 at 258.456 kb on + strand, within ECD_00231 at 258.685 kb on - strand at 258.808 kb on - strand at 258.854 kb on + strand at 258.855 kb on - strand at 258.867 kb on - strand at 258.968 kb on - strand, within ECD_00232 at 258.979 kb on - strand, within ECD_00232 at 259.091 kb on - strand, within ECD_00232 at 259.097 kb on + strand, within ECD_00232 at 259.287 kb on - strand, within ECD_00232 at 259.297 kb on - strand, within ECD_00232 at 259.363 kb on + strand, within ECD_00232 at 259.364 kb on - strand, within ECD_00232 at 259.364 kb on - strand, within ECD_00232 at 259.367 kb on + strand, within ECD_00232 at 259.367 kb on + strand, within ECD_00232 at 259.368 kb on - strand, within ECD_00232 at 259.579 kb on - strand, within ECD_00232 at 259.587 kb on + strand, within ECD_00232 at 259.594 kb on - strand, within ECD_00232 at 259.681 kb on + strand, within ECD_00232 at 259.682 kb on - strand, within ECD_00232
Per-strain Table
Position Strand Gene LocusTag Fraction Bas33 remove 257,516 + ECD_00229 0.53 +1.0 257,958 + +0.3 257,970 + -0.7 258,061 + ECD_00230 0.37 +0.4 258,062 - ECD_00230 0.38 +1.3 258,279 - ECD_00231 0.17 -0.1 258,301 - ECD_00231 0.21 -2.1 258,375 + ECD_00231 0.36 -0.1 258,456 + ECD_00231 0.52 -0.4 258,685 - +0.3 258,808 - +0.9 258,854 + +0.7 258,855 - +1.2 258,867 - -0.3 258,968 - ECD_00232 0.15 -0.3 258,979 - ECD_00232 0.16 -0.7 259,091 - ECD_00232 0.23 +0.8 259,097 + ECD_00232 0.24 -0.4 259,287 - ECD_00232 0.37 +0.9 259,297 - ECD_00232 0.37 -1.2 259,363 + ECD_00232 0.42 -0.8 259,364 - ECD_00232 0.42 -1.5 259,364 - ECD_00232 0.42 -0.4 259,367 + ECD_00232 0.42 -0.6 259,367 + ECD_00232 0.42 -0.5 259,368 - ECD_00232 0.42 +0.9 259,579 - ECD_00232 0.57 -1.3 259,587 + ECD_00232 0.57 -1.2 259,594 - ECD_00232 0.58 -0.9 259,681 + ECD_00232 0.64 +0.1 259,682 - ECD_00232 0.64 -0.1
Or see this region's nucleotide sequence