Strain Fitness in Escherichia coli BL21 around ECD_00165

Experiment: Bas33

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00163 and ECD_00164 are separated by 53 nucleotidesECD_00164 and ECD_00165 are separated by 30 nucleotidesECD_00165 and ECD_00166 are separated by 61 nucleotides ECD_00163: ECD_00163 - phosphodiesterase with model substrate bis-pNPP, at 187,100 to 187,912 _00163 ECD_00164: ECD_00164 - 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase, at 187,966 to 188,790 _00164 ECD_00165: ECD_00165 - uridylyltransferase, at 188,821 to 191,493 _00165 ECD_00166: ECD_00166 - methionine aminopeptidase, at 191,555 to 192,349 _00166 Position (kb) 188 189 190 191 192Strain fitness (log2 ratio) -2 -1 0 1at 187.843 kb on + strandat 187.845 kb on + strandat 187.868 kb on + strandat 187.869 kb on - strandat 187.961 kb on + strandat 187.961 kb on + strandat 187.962 kb on - strandat 188.810 kb on - strandat 188.810 kb on - strandat 188.810 kb on - strandat 188.867 kb on - strandat 189.641 kb on + strand, within ECD_00165at 189.642 kb on - strand, within ECD_00165at 189.672 kb on + strand, within ECD_00165at 189.721 kb on + strand, within ECD_00165at 189.898 kb on + strand, within ECD_00165at 189.898 kb on + strand, within ECD_00165at 189.899 kb on - strand, within ECD_00165at 190.080 kb on + strand, within ECD_00165at 190.080 kb on + strand, within ECD_00165at 190.081 kb on - strand, within ECD_00165at 190.317 kb on - strand, within ECD_00165at 190.359 kb on + strand, within ECD_00165at 190.359 kb on + strand, within ECD_00165at 190.359 kb on + strand, within ECD_00165at 190.359 kb on + strand, within ECD_00165at 190.386 kb on + strand, within ECD_00165at 190.391 kb on - strand, within ECD_00165at 192.388 kb on + strandat 192.388 kb on + strandat 192.388 kb on + strandat 192.388 kb on + strandat 192.388 kb on + strandat 192.388 kb on + strandat 192.388 kb on + strandat 192.388 kb on + strandat 192.388 kb on + strandat 192.388 kb on + strandat 192.389 kb on - strandat 192.389 kb on - strandat 192.389 kb on - strandat 192.389 kb on - strandat 192.389 kb on - strandat 192.389 kb on - strandat 192.389 kb on - strandat 192.389 kb on - strandat 192.471 kb on + strandat 192.474 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas33
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187,843 + -0.5
187,845 + -0.0
187,868 + -0.9
187,869 - +0.0
187,961 + +0.3
187,961 + +0.7
187,962 - -0.4
188,810 - -1.5
188,810 - -1.0
188,810 - +0.4
188,867 - -0.6
189,641 + ECD_00165 0.31 -1.3
189,642 - ECD_00165 0.31 +0.8
189,672 + ECD_00165 0.32 -0.1
189,721 + ECD_00165 0.34 -1.5
189,898 + ECD_00165 0.40 -0.1
189,898 + ECD_00165 0.40 -2.4
189,899 - ECD_00165 0.40 -0.3
190,080 + ECD_00165 0.47 -0.6
190,080 + ECD_00165 0.47 +0.6
190,081 - ECD_00165 0.47 -0.1
190,317 - ECD_00165 0.56 +0.6
190,359 + ECD_00165 0.58 -0.6
190,359 + ECD_00165 0.58 +1.0
190,359 + ECD_00165 0.58 -0.5
190,359 + ECD_00165 0.58 +0.7
190,386 + ECD_00165 0.59 +0.9
190,391 - ECD_00165 0.59 -0.2
192,388 + +0.5
192,388 + +0.5
192,388 + -1.8
192,388 + +0.7
192,388 + -0.5
192,388 + -0.5
192,388 + -0.1
192,388 + +0.3
192,388 + -0.3
192,388 + +0.2
192,389 - -0.1
192,389 - -0.2
192,389 - +0.3
192,389 - +0.0
192,389 - +0.5
192,389 - +0.6
192,389 - -0.2
192,389 - +0.2
192,471 + +0.4
192,474 - -0.3

Or see this region's nucleotide sequence