Experiment: Bas33
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00140 and ECD_00141 are separated by 369 nucleotides ECD_00141 and ECD_00142 overlap by 4 nucleotides ECD_00142 and ECD_00143 are separated by 92 nucleotides
ECD_00140: ECD_00140 - putative fimbrial-like adhesin protein, at 159,151 to 159,735
_00140
ECD_00141: ECD_00141 - 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase, at 160,105 to 160,584
_00141
ECD_00142: ECD_00142 - poly(A) polymerase, at 160,581 to 161,945
_00142
ECD_00143: ECD_00143 - glutamyl-Q tRNA(Asp) synthetase, at 162,038 to 162,964
_00143
Position (kb)
160
161
162 Strain fitness (log2 ratio)
-1
0
1 at 160.572 kb on - strand at 160.572 kb on - strand at 160.778 kb on - strand, within ECD_00142 at 160.842 kb on - strand, within ECD_00142 at 161.174 kb on - strand, within ECD_00142 at 161.190 kb on - strand, within ECD_00142 at 161.192 kb on - strand, within ECD_00142 at 161.355 kb on - strand, within ECD_00142 at 161.474 kb on - strand, within ECD_00142 at 161.474 kb on - strand, within ECD_00142 at 161.592 kb on - strand, within ECD_00142 at 161.688 kb on - strand, within ECD_00142 at 161.731 kb on - strand, within ECD_00142 at 161.761 kb on - strand, within ECD_00142 at 161.822 kb on - strand at 161.822 kb on - strand at 161.865 kb on - strand at 161.865 kb on - strand at 162.292 kb on - strand, within ECD_00143 at 162.421 kb on - strand, within ECD_00143 at 162.421 kb on - strand, within ECD_00143 at 162.421 kb on - strand, within ECD_00143 at 162.592 kb on - strand, within ECD_00143 at 162.592 kb on - strand, within ECD_00143 at 162.592 kb on - strand, within ECD_00143 at 162.637 kb on - strand, within ECD_00143 at 162.640 kb on - strand, within ECD_00143 at 162.644 kb on + strand, within ECD_00143 at 162.645 kb on - strand, within ECD_00143 at 162.757 kb on + strand, within ECD_00143 at 162.804 kb on - strand, within ECD_00143 at 162.805 kb on + strand, within ECD_00143 at 162.805 kb on + strand, within ECD_00143 at 162.806 kb on - strand, within ECD_00143 at 162.806 kb on - strand, within ECD_00143 at 162.806 kb on - strand, within ECD_00143 at 162.810 kb on - strand, within ECD_00143 at 162.846 kb on + strand, within ECD_00143 at 162.847 kb on - strand, within ECD_00143 at 162.847 kb on - strand, within ECD_00143 at 162.916 kb on + strand at 162.916 kb on + strand at 162.917 kb on - strand at 162.918 kb on + strand at 162.918 kb on + strand at 162.918 kb on + strand at 162.918 kb on + strand at 162.918 kb on + strand at 162.919 kb on - strand at 162.919 kb on - strand at 162.919 kb on - strand at 162.919 kb on - strand at 162.919 kb on - strand at 162.919 kb on - strand at 162.919 kb on - strand at 162.919 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas33 remove 160,572 - -0.0 160,572 - +0.8 160,778 - ECD_00142 0.14 -1.0 160,842 - ECD_00142 0.19 +0.2 161,174 - ECD_00142 0.43 -1.2 161,190 - ECD_00142 0.45 -0.5 161,192 - ECD_00142 0.45 -1.4 161,355 - ECD_00142 0.57 -1.4 161,474 - ECD_00142 0.65 +0.5 161,474 - ECD_00142 0.65 -1.0 161,592 - ECD_00142 0.74 -1.1 161,688 - ECD_00142 0.81 -0.7 161,731 - ECD_00142 0.84 -0.7 161,761 - ECD_00142 0.86 +1.2 161,822 - -0.0 161,822 - +0.1 161,865 - +0.2 161,865 - +0.5 162,292 - ECD_00143 0.27 +0.4 162,421 - ECD_00143 0.41 -0.1 162,421 - ECD_00143 0.41 -0.2 162,421 - ECD_00143 0.41 +0.9 162,592 - ECD_00143 0.60 +0.1 162,592 - ECD_00143 0.60 -0.8 162,592 - ECD_00143 0.60 -0.4 162,637 - ECD_00143 0.65 -0.5 162,640 - ECD_00143 0.65 +0.2 162,644 + ECD_00143 0.65 -0.2 162,645 - ECD_00143 0.65 +0.3 162,757 + ECD_00143 0.78 +0.4 162,804 - ECD_00143 0.83 +0.6 162,805 + ECD_00143 0.83 +0.1 162,805 + ECD_00143 0.83 +0.2 162,806 - ECD_00143 0.83 +0.2 162,806 - ECD_00143 0.83 +0.2 162,806 - ECD_00143 0.83 +0.0 162,810 - ECD_00143 0.83 +0.0 162,846 + ECD_00143 0.87 +0.5 162,847 - ECD_00143 0.87 -0.6 162,847 - ECD_00143 0.87 -0.5 162,916 + +0.5 162,916 + -0.2 162,917 - +0.0 162,918 + +0.2 162,918 + -0.2 162,918 + -0.3 162,918 + -0.2 162,918 + +0.1 162,919 - -1.0 162,919 - -0.2 162,919 - +0.5 162,919 - +0.2 162,919 - -0.8 162,919 - -1.6 162,919 - -0.2 162,919 - -1.2
Or see this region's nucleotide sequence