Strain Fitness in Escherichia coli BL21 around ECD_00130

Experiment: Bas33

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00129 and ECD_00130 are separated by 3 nucleotidesECD_00130 and ECD_00131 are separated by 273 nucleotides ECD_00129: ECD_00129 - putative polysaccharide deacetylase lipoprotein, at 147,885 to 149,114 _00129 ECD_00130: ECD_00130 - aspartate 1-decarboxylase, at 149,118 to 149,498 _00130 ECD_00131: ECD_00131 - transposase_31 family protein, at 149,772 to 150,674 _00131 Position (kb) 149 150Strain fitness (log2 ratio) -1 0 1at 148.199 kb on - strand, within ECD_00129at 148.202 kb on + strand, within ECD_00129at 148.225 kb on - strand, within ECD_00129at 148.356 kb on + strand, within ECD_00129at 148.357 kb on - strand, within ECD_00129at 148.357 kb on - strand, within ECD_00129at 148.357 kb on - strand, within ECD_00129at 148.408 kb on - strand, within ECD_00129at 148.408 kb on - strand, within ECD_00129at 148.408 kb on - strand, within ECD_00129at 148.415 kb on + strand, within ECD_00129at 148.548 kb on + strand, within ECD_00129at 148.559 kb on + strand, within ECD_00129at 148.560 kb on - strand, within ECD_00129at 148.592 kb on + strand, within ECD_00129at 148.592 kb on + strand, within ECD_00129at 148.626 kb on + strand, within ECD_00129at 148.842 kb on - strand, within ECD_00129at 148.853 kb on + strand, within ECD_00129at 148.854 kb on - strand, within ECD_00129at 149.011 kb on + strandat 149.012 kb on - strandat 149.012 kb on - strandat 149.039 kb on - strandat 149.049 kb on + strandat 149.049 kb on + strandat 149.049 kb on + strandat 149.051 kb on + strandat 149.057 kb on - strandat 149.113 kb on - strandat 149.151 kb on - strandat 149.294 kb on + strand, within ECD_00130at 149.295 kb on - strand, within ECD_00130at 149.327 kb on - strand, within ECD_00130at 149.327 kb on - strand, within ECD_00130at 149.498 kb on + strandat 149.506 kb on - strandat 149.513 kb on + strandat 149.568 kb on - strandat 149.592 kb on + strandat 149.593 kb on - strandat 149.659 kb on - strandat 149.857 kb on + strandat 150.065 kb on + strand, within ECD_00131at 150.065 kb on + strand, within ECD_00131at 150.066 kb on - strand, within ECD_00131at 150.189 kb on + strand, within ECD_00131at 150.218 kb on + strand, within ECD_00131at 150.219 kb on - strand, within ECD_00131at 150.219 kb on - strand, within ECD_00131at 150.331 kb on + strand, within ECD_00131at 150.332 kb on - strand, within ECD_00131at 150.332 kb on - strand, within ECD_00131at 150.332 kb on - strand, within ECD_00131at 150.376 kb on - strand, within ECD_00131at 150.376 kb on - strand, within ECD_00131at 150.411 kb on + strand, within ECD_00131at 150.412 kb on - strand, within ECD_00131at 150.413 kb on + strand, within ECD_00131at 150.432 kb on - strand, within ECD_00131at 150.453 kb on + strand, within ECD_00131

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas33
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148,199 - ECD_00129 0.26 +1.6
148,202 + ECD_00129 0.26 -0.6
148,225 - ECD_00129 0.28 +0.1
148,356 + ECD_00129 0.38 -0.3
148,357 - ECD_00129 0.38 +0.3
148,357 - ECD_00129 0.38 +0.2
148,357 - ECD_00129 0.38 -0.1
148,408 - ECD_00129 0.43 +0.1
148,408 - ECD_00129 0.43 -0.8
148,408 - ECD_00129 0.43 +1.2
148,415 + ECD_00129 0.43 -0.9
148,548 + ECD_00129 0.54 -0.6
148,559 + ECD_00129 0.55 +0.1
148,560 - ECD_00129 0.55 +0.5
148,592 + ECD_00129 0.57 +0.4
148,592 + ECD_00129 0.57 +0.4
148,626 + ECD_00129 0.60 +0.7
148,842 - ECD_00129 0.78 -0.2
148,853 + ECD_00129 0.79 +0.4
148,854 - ECD_00129 0.79 +0.4
149,011 + +0.3
149,012 - +0.5
149,012 - -0.5
149,039 - +0.4
149,049 + -0.6
149,049 + -0.6
149,049 + +0.3
149,051 + +0.1
149,057 - +0.4
149,113 - +0.4
149,151 - -0.2
149,294 + ECD_00130 0.46 -1.5
149,295 - ECD_00130 0.46 -0.1
149,327 - ECD_00130 0.55 -1.2
149,327 - ECD_00130 0.55 +0.1
149,498 + -0.9
149,506 - -0.3
149,513 + +1.0
149,568 - -0.8
149,592 + -0.1
149,593 - -0.6
149,659 - +0.1
149,857 + -0.4
150,065 + ECD_00131 0.32 +1.1
150,065 + ECD_00131 0.32 -1.1
150,066 - ECD_00131 0.33 -0.6
150,189 + ECD_00131 0.46 +0.0
150,218 + ECD_00131 0.49 -0.3
150,219 - ECD_00131 0.50 -0.7
150,219 - ECD_00131 0.50 -0.1
150,331 + ECD_00131 0.62 +0.3
150,332 - ECD_00131 0.62 -0.2
150,332 - ECD_00131 0.62 -0.1
150,332 - ECD_00131 0.62 -0.3
150,376 - ECD_00131 0.67 -0.5
150,376 - ECD_00131 0.67 +0.4
150,411 + ECD_00131 0.71 +0.1
150,412 - ECD_00131 0.71 +0.8
150,413 + ECD_00131 0.71 +0.1
150,432 - ECD_00131 0.73 +0.6
150,453 + ECD_00131 0.75 +0.4

Or see this region's nucleotide sequence