Experiment: Bas33
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00129 and ECD_00130 are separated by 3 nucleotides ECD_00130 and ECD_00131 are separated by 273 nucleotides
ECD_00129: ECD_00129 - putative polysaccharide deacetylase lipoprotein, at 147,885 to 149,114
_00129
ECD_00130: ECD_00130 - aspartate 1-decarboxylase, at 149,118 to 149,498
_00130
ECD_00131: ECD_00131 - transposase_31 family protein, at 149,772 to 150,674
_00131
Position (kb) 149
150 Strain fitness (log2 ratio) -1
0
1 at 148.199 kb on - strand, within ECD_00129 at 148.202 kb on + strand, within ECD_00129 at 148.225 kb on - strand, within ECD_00129 at 148.356 kb on + strand, within ECD_00129 at 148.357 kb on - strand, within ECD_00129 at 148.357 kb on - strand, within ECD_00129 at 148.357 kb on - strand, within ECD_00129 at 148.408 kb on - strand, within ECD_00129 at 148.408 kb on - strand, within ECD_00129 at 148.408 kb on - strand, within ECD_00129 at 148.415 kb on + strand, within ECD_00129 at 148.548 kb on + strand, within ECD_00129 at 148.559 kb on + strand, within ECD_00129 at 148.560 kb on - strand, within ECD_00129 at 148.592 kb on + strand, within ECD_00129 at 148.592 kb on + strand, within ECD_00129 at 148.626 kb on + strand, within ECD_00129 at 148.842 kb on - strand, within ECD_00129 at 148.853 kb on + strand, within ECD_00129 at 148.854 kb on - strand, within ECD_00129 at 149.011 kb on + strand at 149.012 kb on - strand at 149.012 kb on - strand at 149.039 kb on - strand at 149.049 kb on + strand at 149.049 kb on + strand at 149.049 kb on + strand at 149.051 kb on + strand at 149.057 kb on - strand at 149.113 kb on - strand at 149.151 kb on - strand at 149.294 kb on + strand, within ECD_00130 at 149.295 kb on - strand, within ECD_00130 at 149.327 kb on - strand, within ECD_00130 at 149.327 kb on - strand, within ECD_00130 at 149.498 kb on + strand at 149.506 kb on - strand at 149.513 kb on + strand at 149.568 kb on - strand at 149.592 kb on + strand at 149.593 kb on - strand at 149.659 kb on - strand at 149.857 kb on + strand at 150.065 kb on + strand, within ECD_00131 at 150.065 kb on + strand, within ECD_00131 at 150.066 kb on - strand, within ECD_00131 at 150.189 kb on + strand, within ECD_00131 at 150.218 kb on + strand, within ECD_00131 at 150.219 kb on - strand, within ECD_00131 at 150.219 kb on - strand, within ECD_00131 at 150.331 kb on + strand, within ECD_00131 at 150.332 kb on - strand, within ECD_00131 at 150.332 kb on - strand, within ECD_00131 at 150.332 kb on - strand, within ECD_00131 at 150.376 kb on - strand, within ECD_00131 at 150.376 kb on - strand, within ECD_00131 at 150.411 kb on + strand, within ECD_00131 at 150.412 kb on - strand, within ECD_00131 at 150.413 kb on + strand, within ECD_00131 at 150.432 kb on - strand, within ECD_00131 at 150.453 kb on + strand, within ECD_00131
Per-strain Table
Position Strand Gene LocusTag Fraction Bas33 remove 148,199 - ECD_00129 0.26 +1.6 148,202 + ECD_00129 0.26 -0.6 148,225 - ECD_00129 0.28 +0.1 148,356 + ECD_00129 0.38 -0.3 148,357 - ECD_00129 0.38 +0.3 148,357 - ECD_00129 0.38 +0.2 148,357 - ECD_00129 0.38 -0.1 148,408 - ECD_00129 0.43 +0.1 148,408 - ECD_00129 0.43 -0.8 148,408 - ECD_00129 0.43 +1.2 148,415 + ECD_00129 0.43 -0.9 148,548 + ECD_00129 0.54 -0.6 148,559 + ECD_00129 0.55 +0.1 148,560 - ECD_00129 0.55 +0.5 148,592 + ECD_00129 0.57 +0.4 148,592 + ECD_00129 0.57 +0.4 148,626 + ECD_00129 0.60 +0.7 148,842 - ECD_00129 0.78 -0.2 148,853 + ECD_00129 0.79 +0.4 148,854 - ECD_00129 0.79 +0.4 149,011 + +0.3 149,012 - +0.5 149,012 - -0.5 149,039 - +0.4 149,049 + -0.6 149,049 + -0.6 149,049 + +0.3 149,051 + +0.1 149,057 - +0.4 149,113 - +0.4 149,151 - -0.2 149,294 + ECD_00130 0.46 -1.5 149,295 - ECD_00130 0.46 -0.1 149,327 - ECD_00130 0.55 -1.2 149,327 - ECD_00130 0.55 +0.1 149,498 + -0.9 149,506 - -0.3 149,513 + +1.0 149,568 - -0.8 149,592 + -0.1 149,593 - -0.6 149,659 - +0.1 149,857 + -0.4 150,065 + ECD_00131 0.32 +1.1 150,065 + ECD_00131 0.32 -1.1 150,066 - ECD_00131 0.33 -0.6 150,189 + ECD_00131 0.46 +0.0 150,218 + ECD_00131 0.49 -0.3 150,219 - ECD_00131 0.50 -0.7 150,219 - ECD_00131 0.50 -0.1 150,331 + ECD_00131 0.62 +0.3 150,332 - ECD_00131 0.62 -0.2 150,332 - ECD_00131 0.62 -0.1 150,332 - ECD_00131 0.62 -0.3 150,376 - ECD_00131 0.67 -0.5 150,376 - ECD_00131 0.67 +0.4 150,411 + ECD_00131 0.71 +0.1 150,412 - ECD_00131 0.71 +0.8 150,413 + ECD_00131 0.71 +0.1 150,432 - ECD_00131 0.73 +0.6 150,453 + ECD_00131 0.75 +0.4
Or see this region's nucleotide sequence