Experiment: Bas33
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00118 and ECD_00119 are separated by 37 nucleotides ECD_00119 and ECD_00120 are separated by 15 nucleotides ECD_00120 and ECD_00121 are separated by 105 nucleotides ECD_00121 and ECD_00122 are separated by 165 nucleotides
ECD_00118: ECD_00118 - UPF0231 family protein, at 137,192 to 137,554
_00118
ECD_00119: ECD_00119 - S-adenosylmethionine decarboxylase, at 137,592 to 138,386
_00119
ECD_00120: ECD_00120 - spermidine synthase (putrescine aminopropyltransferase), at 138,402 to 139,268
_00120
ECD_00121: ECD_00121 - PulS_OutS family protein, at 139,374 to 139,721
_00121
ECD_00122: ECD_00122 - multicopper oxidase (laccase), at 139,887 to 141,437
_00122
Position (kb)
138
139
140 Strain fitness (log2 ratio)
-2
-1
0
1 at 137.465 kb on + strand, within ECD_00118 at 137.465 kb on + strand, within ECD_00118 at 137.466 kb on - strand, within ECD_00118 at 137.469 kb on - strand, within ECD_00118 at 137.606 kb on + strand at 137.607 kb on - strand at 137.620 kb on + strand at 137.621 kb on - strand at 137.707 kb on + strand, within ECD_00119 at 137.788 kb on + strand, within ECD_00119 at 137.788 kb on + strand, within ECD_00119 at 137.789 kb on - strand, within ECD_00119 at 137.789 kb on - strand, within ECD_00119 at 137.813 kb on + strand, within ECD_00119 at 137.831 kb on + strand, within ECD_00119 at 137.858 kb on + strand, within ECD_00119 at 138.000 kb on - strand, within ECD_00119 at 138.004 kb on - strand, within ECD_00119 at 138.035 kb on + strand, within ECD_00119 at 138.035 kb on + strand, within ECD_00119 at 138.035 kb on + strand, within ECD_00119 at 138.035 kb on + strand, within ECD_00119 at 138.036 kb on - strand, within ECD_00119 at 138.036 kb on - strand, within ECD_00119 at 138.036 kb on - strand, within ECD_00119 at 138.036 kb on - strand, within ECD_00119 at 138.036 kb on - strand, within ECD_00119 at 138.036 kb on - strand, within ECD_00119 at 138.036 kb on - strand, within ECD_00119 at 138.039 kb on + strand, within ECD_00119 at 138.040 kb on - strand, within ECD_00119 at 138.047 kb on + strand, within ECD_00119 at 138.195 kb on - strand, within ECD_00119 at 138.201 kb on - strand, within ECD_00119 at 138.201 kb on - strand, within ECD_00119 at 138.203 kb on + strand, within ECD_00119 at 138.258 kb on - strand, within ECD_00119 at 138.272 kb on + strand, within ECD_00119 at 138.275 kb on - strand, within ECD_00119 at 138.275 kb on - strand, within ECD_00119 at 138.275 kb on - strand, within ECD_00119 at 138.281 kb on + strand, within ECD_00119 at 138.325 kb on + strand at 138.326 kb on - strand at 138.330 kb on - strand at 138.436 kb on + strand at 138.437 kb on - strand at 138.445 kb on - strand at 138.478 kb on + strand at 138.479 kb on - strand at 138.555 kb on - strand, within ECD_00120 at 138.592 kb on + strand, within ECD_00120 at 138.593 kb on - strand, within ECD_00120 at 138.634 kb on + strand, within ECD_00120 at 138.746 kb on - strand, within ECD_00120 at 138.803 kb on + strand, within ECD_00120 at 138.804 kb on - strand, within ECD_00120 at 138.906 kb on + strand, within ECD_00120 at 138.906 kb on + strand, within ECD_00120 at 138.910 kb on + strand, within ECD_00120 at 139.082 kb on - strand, within ECD_00120 at 139.082 kb on - strand, within ECD_00120 at 139.082 kb on - strand, within ECD_00120 at 139.085 kb on + strand, within ECD_00120 at 139.111 kb on - strand, within ECD_00120 at 139.202 kb on + strand at 139.202 kb on + strand at 139.202 kb on + strand at 139.277 kb on - strand at 139.316 kb on - strand at 139.316 kb on - strand at 139.316 kb on - strand at 139.318 kb on + strand at 139.322 kb on + strand at 139.322 kb on + strand at 139.384 kb on + strand at 139.505 kb on - strand, within ECD_00121 at 139.568 kb on + strand, within ECD_00121 at 139.572 kb on + strand, within ECD_00121 at 139.573 kb on - strand, within ECD_00121 at 139.632 kb on - strand, within ECD_00121 at 139.696 kb on - strand at 139.739 kb on + strand at 139.755 kb on + strand at 139.784 kb on + strand at 139.836 kb on + strand at 139.837 kb on - strand at 139.883 kb on - strand at 139.883 kb on - strand at 139.886 kb on + strand at 139.886 kb on + strand at 139.963 kb on + strand at 140.036 kb on - strand at 140.039 kb on + strand at 140.040 kb on - strand at 140.082 kb on - strand, within ECD_00122 at 140.091 kb on + strand, within ECD_00122 at 140.153 kb on + strand, within ECD_00122 at 140.158 kb on - strand, within ECD_00122 at 140.158 kb on - strand, within ECD_00122
Per-strain Table
Position Strand Gene LocusTag Fraction Bas33 remove 137,465 + ECD_00118 0.75 -0.3 137,465 + ECD_00118 0.75 +0.2 137,466 - ECD_00118 0.75 +0.8 137,469 - ECD_00118 0.76 +0.6 137,606 + -0.2 137,607 - -0.1 137,620 + +0.3 137,621 - +0.1 137,707 + ECD_00119 0.14 +0.3 137,788 + ECD_00119 0.25 +0.4 137,788 + ECD_00119 0.25 -0.6 137,789 - ECD_00119 0.25 -0.1 137,789 - ECD_00119 0.25 +0.7 137,813 + ECD_00119 0.28 -1.0 137,831 + ECD_00119 0.30 -0.3 137,858 + ECD_00119 0.33 +0.4 138,000 - ECD_00119 0.51 +0.5 138,004 - ECD_00119 0.52 -0.1 138,035 + ECD_00119 0.56 -0.0 138,035 + ECD_00119 0.56 +0.4 138,035 + ECD_00119 0.56 +0.2 138,035 + ECD_00119 0.56 +0.2 138,036 - ECD_00119 0.56 -0.0 138,036 - ECD_00119 0.56 -1.1 138,036 - ECD_00119 0.56 +1.2 138,036 - ECD_00119 0.56 +1.0 138,036 - ECD_00119 0.56 -0.8 138,036 - ECD_00119 0.56 +0.8 138,036 - ECD_00119 0.56 -0.2 138,039 + ECD_00119 0.56 -1.0 138,040 - ECD_00119 0.56 -0.0 138,047 + ECD_00119 0.57 -0.8 138,195 - ECD_00119 0.76 -0.1 138,201 - ECD_00119 0.77 -0.8 138,201 - ECD_00119 0.77 +0.1 138,203 + ECD_00119 0.77 -0.5 138,258 - ECD_00119 0.84 -1.0 138,272 + ECD_00119 0.86 -0.0 138,275 - ECD_00119 0.86 +0.3 138,275 - ECD_00119 0.86 -0.5 138,275 - ECD_00119 0.86 -2.1 138,281 + ECD_00119 0.87 +0.7 138,325 + -0.8 138,326 - +0.7 138,330 - -0.2 138,436 + -0.6 138,437 - -0.4 138,445 - +0.1 138,478 + -0.8 138,479 - -0.4 138,555 - ECD_00120 0.18 +0.0 138,592 + ECD_00120 0.22 -0.1 138,593 - ECD_00120 0.22 -0.6 138,634 + ECD_00120 0.27 -0.9 138,746 - ECD_00120 0.40 -0.8 138,803 + ECD_00120 0.46 -0.1 138,804 - ECD_00120 0.46 +0.4 138,906 + ECD_00120 0.58 +0.2 138,906 + ECD_00120 0.58 +0.3 138,910 + ECD_00120 0.59 -0.5 139,082 - ECD_00120 0.78 -1.2 139,082 - ECD_00120 0.78 +0.1 139,082 - ECD_00120 0.78 +0.3 139,085 + ECD_00120 0.79 -1.0 139,111 - ECD_00120 0.82 -0.9 139,202 + +0.5 139,202 + -0.8 139,202 + -0.2 139,277 - -0.4 139,316 - +1.3 139,316 - +0.3 139,316 - +0.1 139,318 + +0.1 139,322 + -0.9 139,322 + -0.7 139,384 + +0.0 139,505 - ECD_00121 0.38 +0.3 139,568 + ECD_00121 0.56 -0.7 139,572 + ECD_00121 0.57 -0.5 139,573 - ECD_00121 0.57 -0.2 139,632 - ECD_00121 0.74 -0.4 139,696 - +0.1 139,739 + +0.2 139,755 + +0.1 139,784 + -0.5 139,836 + -0.1 139,837 - +0.1 139,883 - -0.5 139,883 - -0.8 139,886 + +0.6 139,886 + +0.5 139,963 + +0.3 140,036 - -0.5 140,039 + +0.8 140,040 - +0.9 140,082 - ECD_00122 0.13 +0.7 140,091 + ECD_00122 0.13 -0.7 140,153 + ECD_00122 0.17 -0.9 140,158 - ECD_00122 0.17 -0.3 140,158 - ECD_00122 0.17 -0.7
Or see this region's nucleotide sequence