Strain Fitness in Escherichia coli BL21 around ECD_00120

Experiment: Bas33

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00118 and ECD_00119 are separated by 37 nucleotidesECD_00119 and ECD_00120 are separated by 15 nucleotidesECD_00120 and ECD_00121 are separated by 105 nucleotidesECD_00121 and ECD_00122 are separated by 165 nucleotides ECD_00118: ECD_00118 - UPF0231 family protein, at 137,192 to 137,554 _00118 ECD_00119: ECD_00119 - S-adenosylmethionine decarboxylase, at 137,592 to 138,386 _00119 ECD_00120: ECD_00120 - spermidine synthase (putrescine aminopropyltransferase), at 138,402 to 139,268 _00120 ECD_00121: ECD_00121 - PulS_OutS family protein, at 139,374 to 139,721 _00121 ECD_00122: ECD_00122 - multicopper oxidase (laccase), at 139,887 to 141,437 _00122 Position (kb) 138 139 140Strain fitness (log2 ratio) -2 -1 0 1at 137.465 kb on + strand, within ECD_00118at 137.465 kb on + strand, within ECD_00118at 137.466 kb on - strand, within ECD_00118at 137.469 kb on - strand, within ECD_00118at 137.606 kb on + strandat 137.607 kb on - strandat 137.620 kb on + strandat 137.621 kb on - strandat 137.707 kb on + strand, within ECD_00119at 137.788 kb on + strand, within ECD_00119at 137.788 kb on + strand, within ECD_00119at 137.789 kb on - strand, within ECD_00119at 137.789 kb on - strand, within ECD_00119at 137.813 kb on + strand, within ECD_00119at 137.831 kb on + strand, within ECD_00119at 137.858 kb on + strand, within ECD_00119at 138.000 kb on - strand, within ECD_00119at 138.004 kb on - strand, within ECD_00119at 138.035 kb on + strand, within ECD_00119at 138.035 kb on + strand, within ECD_00119at 138.035 kb on + strand, within ECD_00119at 138.035 kb on + strand, within ECD_00119at 138.036 kb on - strand, within ECD_00119at 138.036 kb on - strand, within ECD_00119at 138.036 kb on - strand, within ECD_00119at 138.036 kb on - strand, within ECD_00119at 138.036 kb on - strand, within ECD_00119at 138.036 kb on - strand, within ECD_00119at 138.036 kb on - strand, within ECD_00119at 138.039 kb on + strand, within ECD_00119at 138.040 kb on - strand, within ECD_00119at 138.047 kb on + strand, within ECD_00119at 138.195 kb on - strand, within ECD_00119at 138.201 kb on - strand, within ECD_00119at 138.201 kb on - strand, within ECD_00119at 138.203 kb on + strand, within ECD_00119at 138.258 kb on - strand, within ECD_00119at 138.272 kb on + strand, within ECD_00119at 138.275 kb on - strand, within ECD_00119at 138.275 kb on - strand, within ECD_00119at 138.275 kb on - strand, within ECD_00119at 138.281 kb on + strand, within ECD_00119at 138.325 kb on + strandat 138.326 kb on - strandat 138.330 kb on - strandat 138.436 kb on + strandat 138.437 kb on - strandat 138.445 kb on - strandat 138.478 kb on + strandat 138.479 kb on - strandat 138.555 kb on - strand, within ECD_00120at 138.592 kb on + strand, within ECD_00120at 138.593 kb on - strand, within ECD_00120at 138.634 kb on + strand, within ECD_00120at 138.746 kb on - strand, within ECD_00120at 138.803 kb on + strand, within ECD_00120at 138.804 kb on - strand, within ECD_00120at 138.906 kb on + strand, within ECD_00120at 138.906 kb on + strand, within ECD_00120at 138.910 kb on + strand, within ECD_00120at 139.082 kb on - strand, within ECD_00120at 139.082 kb on - strand, within ECD_00120at 139.082 kb on - strand, within ECD_00120at 139.085 kb on + strand, within ECD_00120at 139.111 kb on - strand, within ECD_00120at 139.202 kb on + strandat 139.202 kb on + strandat 139.202 kb on + strandat 139.277 kb on - strandat 139.316 kb on - strandat 139.316 kb on - strandat 139.316 kb on - strandat 139.318 kb on + strandat 139.322 kb on + strandat 139.322 kb on + strandat 139.384 kb on + strandat 139.505 kb on - strand, within ECD_00121at 139.568 kb on + strand, within ECD_00121at 139.572 kb on + strand, within ECD_00121at 139.573 kb on - strand, within ECD_00121at 139.632 kb on - strand, within ECD_00121at 139.696 kb on - strandat 139.739 kb on + strandat 139.755 kb on + strandat 139.784 kb on + strandat 139.836 kb on + strandat 139.837 kb on - strandat 139.883 kb on - strandat 139.883 kb on - strandat 139.886 kb on + strandat 139.886 kb on + strandat 139.963 kb on + strandat 140.036 kb on - strandat 140.039 kb on + strandat 140.040 kb on - strandat 140.082 kb on - strand, within ECD_00122at 140.091 kb on + strand, within ECD_00122at 140.153 kb on + strand, within ECD_00122at 140.158 kb on - strand, within ECD_00122at 140.158 kb on - strand, within ECD_00122

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas33
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137,465 + ECD_00118 0.75 -0.3
137,465 + ECD_00118 0.75 +0.2
137,466 - ECD_00118 0.75 +0.8
137,469 - ECD_00118 0.76 +0.6
137,606 + -0.2
137,607 - -0.1
137,620 + +0.3
137,621 - +0.1
137,707 + ECD_00119 0.14 +0.3
137,788 + ECD_00119 0.25 +0.4
137,788 + ECD_00119 0.25 -0.6
137,789 - ECD_00119 0.25 -0.1
137,789 - ECD_00119 0.25 +0.7
137,813 + ECD_00119 0.28 -1.0
137,831 + ECD_00119 0.30 -0.3
137,858 + ECD_00119 0.33 +0.4
138,000 - ECD_00119 0.51 +0.5
138,004 - ECD_00119 0.52 -0.1
138,035 + ECD_00119 0.56 -0.0
138,035 + ECD_00119 0.56 +0.4
138,035 + ECD_00119 0.56 +0.2
138,035 + ECD_00119 0.56 +0.2
138,036 - ECD_00119 0.56 -0.0
138,036 - ECD_00119 0.56 -1.1
138,036 - ECD_00119 0.56 +1.2
138,036 - ECD_00119 0.56 +1.0
138,036 - ECD_00119 0.56 -0.8
138,036 - ECD_00119 0.56 +0.8
138,036 - ECD_00119 0.56 -0.2
138,039 + ECD_00119 0.56 -1.0
138,040 - ECD_00119 0.56 -0.0
138,047 + ECD_00119 0.57 -0.8
138,195 - ECD_00119 0.76 -0.1
138,201 - ECD_00119 0.77 -0.8
138,201 - ECD_00119 0.77 +0.1
138,203 + ECD_00119 0.77 -0.5
138,258 - ECD_00119 0.84 -1.0
138,272 + ECD_00119 0.86 -0.0
138,275 - ECD_00119 0.86 +0.3
138,275 - ECD_00119 0.86 -0.5
138,275 - ECD_00119 0.86 -2.1
138,281 + ECD_00119 0.87 +0.7
138,325 + -0.8
138,326 - +0.7
138,330 - -0.2
138,436 + -0.6
138,437 - -0.4
138,445 - +0.1
138,478 + -0.8
138,479 - -0.4
138,555 - ECD_00120 0.18 +0.0
138,592 + ECD_00120 0.22 -0.1
138,593 - ECD_00120 0.22 -0.6
138,634 + ECD_00120 0.27 -0.9
138,746 - ECD_00120 0.40 -0.8
138,803 + ECD_00120 0.46 -0.1
138,804 - ECD_00120 0.46 +0.4
138,906 + ECD_00120 0.58 +0.2
138,906 + ECD_00120 0.58 +0.3
138,910 + ECD_00120 0.59 -0.5
139,082 - ECD_00120 0.78 -1.2
139,082 - ECD_00120 0.78 +0.1
139,082 - ECD_00120 0.78 +0.3
139,085 + ECD_00120 0.79 -1.0
139,111 - ECD_00120 0.82 -0.9
139,202 + +0.5
139,202 + -0.8
139,202 + -0.2
139,277 - -0.4
139,316 - +1.3
139,316 - +0.3
139,316 - +0.1
139,318 + +0.1
139,322 + -0.9
139,322 + -0.7
139,384 + +0.0
139,505 - ECD_00121 0.38 +0.3
139,568 + ECD_00121 0.56 -0.7
139,572 + ECD_00121 0.57 -0.5
139,573 - ECD_00121 0.57 -0.2
139,632 - ECD_00121 0.74 -0.4
139,696 - +0.1
139,739 + +0.2
139,755 + +0.1
139,784 + -0.5
139,836 + -0.1
139,837 - +0.1
139,883 - -0.5
139,883 - -0.8
139,886 + +0.6
139,886 + +0.5
139,963 + +0.3
140,036 - -0.5
140,039 + +0.8
140,040 - +0.9
140,082 - ECD_00122 0.13 +0.7
140,091 + ECD_00122 0.13 -0.7
140,153 + ECD_00122 0.17 -0.9
140,158 - ECD_00122 0.17 -0.3
140,158 - ECD_00122 0.17 -0.7

Or see this region's nucleotide sequence