Strain Fitness in Escherichia coli BL21 around ECD_03961

Experiment: Ox4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_03960 and ECD_03961 are separated by 58 nucleotidesECD_03961 and ECD_03962 are separated by 358 nucleotidesECD_03962 and ECD_03963 are separated by 68 nucleotides ECD_03960: ECD_03960 - D-allose ABC transporter periplasmic binding protein, at 4,218,294 to 4,219,229 _03960 ECD_03961: ECD_03961 - d-allose-inducible als operon transcriptional repressor; autorepressor; repressor of rpiR, at 4,219,288 to 4,220,178 _03961 ECD_03962: ECD_03962 - ribose 5-phosphate isomerase B/allose 6-phosphate isomerase, at 4,220,537 to 4,220,986 _03962 ECD_03963: ECD_03963 - putative periplasmic protein, at 4,221,055 to 4,221,384 _03963 Position (kb) 4219 4220 4221Strain fitness (log2 ratio) -2 -1 0 1 2at 4218.568 kb on + strand, within ECD_03960at 4218.569 kb on - strand, within ECD_03960at 4218.579 kb on - strand, within ECD_03960at 4218.582 kb on - strand, within ECD_03960at 4218.606 kb on - strand, within ECD_03960at 4218.626 kb on + strand, within ECD_03960at 4218.786 kb on - strand, within ECD_03960at 4218.904 kb on + strand, within ECD_03960at 4218.904 kb on + strand, within ECD_03960at 4219.350 kb on + strandat 4219.568 kb on - strand, within ECD_03961at 4219.598 kb on - strand, within ECD_03961at 4219.676 kb on - strand, within ECD_03961at 4219.703 kb on - strand, within ECD_03961at 4219.717 kb on - strand, within ECD_03961at 4219.832 kb on - strand, within ECD_03961at 4219.843 kb on - strand, within ECD_03961at 4219.843 kb on - strand, within ECD_03961at 4219.843 kb on - strand, within ECD_03961at 4219.847 kb on - strand, within ECD_03961at 4219.847 kb on - strand, within ECD_03961at 4219.852 kb on - strand, within ECD_03961at 4219.901 kb on - strand, within ECD_03961at 4219.901 kb on - strand, within ECD_03961at 4219.923 kb on - strand, within ECD_03961at 4219.943 kb on - strand, within ECD_03961at 4219.943 kb on - strand, within ECD_03961at 4219.943 kb on - strand, within ECD_03961at 4219.983 kb on + strand, within ECD_03961at 4219.983 kb on + strand, within ECD_03961at 4219.984 kb on - strand, within ECD_03961at 4219.984 kb on - strand, within ECD_03961at 4220.028 kb on + strand, within ECD_03961at 4220.029 kb on - strand, within ECD_03961at 4220.029 kb on - strand, within ECD_03961at 4220.029 kb on - strand, within ECD_03961at 4220.124 kb on - strandat 4220.138 kb on - strandat 4220.138 kb on - strandat 4220.138 kb on - strandat 4220.138 kb on - strandat 4220.138 kb on - strandat 4220.140 kb on - strandat 4220.212 kb on + strandat 4220.213 kb on - strandat 4220.213 kb on - strandat 4220.214 kb on + strandat 4220.215 kb on - strandat 4220.374 kb on + strandat 4220.452 kb on + strandat 4220.453 kb on - strandat 4220.592 kb on + strand, within ECD_03962at 4220.807 kb on + strand, within ECD_03962at 4220.808 kb on - strand, within ECD_03962at 4220.834 kb on - strand, within ECD_03962at 4220.921 kb on + strand, within ECD_03962at 4220.921 kb on + strand, within ECD_03962at 4220.968 kb on - strandat 4220.998 kb on + strandat 4220.999 kb on - strandat 4221.022 kb on - strandat 4221.022 kb on - strandat 4221.031 kb on - strandat 4221.162 kb on + strand, within ECD_03963at 4221.173 kb on - strand, within ECD_03963at 4221.173 kb on - strand, within ECD_03963at 4221.173 kb on - strand, within ECD_03963at 4221.173 kb on - strand, within ECD_03963

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ox4
remove
4,218,568 + ECD_03960 0.29 -0.5
4,218,569 - ECD_03960 0.29 +0.7
4,218,579 - ECD_03960 0.30 +0.2
4,218,582 - ECD_03960 0.31 -0.5
4,218,606 - ECD_03960 0.33 -1.5
4,218,626 + ECD_03960 0.35 -1.2
4,218,786 - ECD_03960 0.53 -0.6
4,218,904 + ECD_03960 0.65 -0.5
4,218,904 + ECD_03960 0.65 +1.4
4,219,350 + +0.1
4,219,568 - ECD_03961 0.31 +0.2
4,219,598 - ECD_03961 0.35 +0.6
4,219,676 - ECD_03961 0.44 -0.2
4,219,703 - ECD_03961 0.47 -0.3
4,219,717 - ECD_03961 0.48 +0.2
4,219,832 - ECD_03961 0.61 -0.5
4,219,843 - ECD_03961 0.62 +0.3
4,219,843 - ECD_03961 0.62 -0.7
4,219,843 - ECD_03961 0.62 +2.2
4,219,847 - ECD_03961 0.63 +0.9
4,219,847 - ECD_03961 0.63 +0.5
4,219,852 - ECD_03961 0.63 -0.0
4,219,901 - ECD_03961 0.69 +0.3
4,219,901 - ECD_03961 0.69 +1.9
4,219,923 - ECD_03961 0.71 -0.2
4,219,943 - ECD_03961 0.74 +0.5
4,219,943 - ECD_03961 0.74 -0.4
4,219,943 - ECD_03961 0.74 -0.5
4,219,983 + ECD_03961 0.78 -0.1
4,219,983 + ECD_03961 0.78 +1.0
4,219,984 - ECD_03961 0.78 -0.5
4,219,984 - ECD_03961 0.78 +0.1
4,220,028 + ECD_03961 0.83 +0.1
4,220,029 - ECD_03961 0.83 -1.0
4,220,029 - ECD_03961 0.83 +0.2
4,220,029 - ECD_03961 0.83 +0.5
4,220,124 - +2.1
4,220,138 - -0.0
4,220,138 - +0.2
4,220,138 - +0.3
4,220,138 - +1.3
4,220,138 - +0.2
4,220,140 - -0.1
4,220,212 + +0.5
4,220,213 - +0.4
4,220,213 - +1.0
4,220,214 + -0.3
4,220,215 - -1.1
4,220,374 + +0.3
4,220,452 + -0.1
4,220,453 - -0.4
4,220,592 + ECD_03962 0.12 -0.0
4,220,807 + ECD_03962 0.60 +0.3
4,220,808 - ECD_03962 0.60 +0.8
4,220,834 - ECD_03962 0.66 -1.5
4,220,921 + ECD_03962 0.85 -0.8
4,220,921 + ECD_03962 0.85 +0.3
4,220,968 - -0.3
4,220,998 + +0.1
4,220,999 - +0.3
4,221,022 - +0.7
4,221,022 - -1.0
4,221,031 - -2.5
4,221,162 + ECD_03963 0.32 -0.6
4,221,173 - ECD_03963 0.36 -1.0
4,221,173 - ECD_03963 0.36 -0.6
4,221,173 - ECD_03963 0.36 +1.2
4,221,173 - ECD_03963 0.36 +0.3

Or see this region's nucleotide sequence