Strain Fitness in Escherichia coli BL21 around ECD_03510

Experiment: Ox4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03509 and ECD_03510 overlap by 16 nucleotidesECD_03510 and ECD_03511 are separated by 74 nucleotides ECD_03509: ECD_03509 - ATP-dependent DNA helicase, at 3,692,002 to 3,694,083 _03509 ECD_03510: ECD_03510 - hypothetical protein, at 3,694,068 to 3,694,862 _03510 ECD_03511: ECD_03511 - glutamate transporter, at 3,694,937 to 3,696,142 _03511 Position (kb) 3694 3695Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3693.073 kb on - strand, within ECD_03509at 3693.320 kb on - strand, within ECD_03509at 3693.344 kb on + strand, within ECD_03509at 3693.460 kb on + strand, within ECD_03509at 3693.461 kb on - strand, within ECD_03509at 3693.471 kb on + strand, within ECD_03509at 3693.472 kb on - strand, within ECD_03509at 3693.472 kb on - strand, within ECD_03509at 3693.472 kb on - strand, within ECD_03509at 3693.632 kb on + strand, within ECD_03509at 3693.699 kb on + strand, within ECD_03509at 3693.755 kb on + strand, within ECD_03509at 3693.756 kb on - strand, within ECD_03509at 3693.882 kb on - strandat 3693.908 kb on + strandat 3694.003 kb on - strandat 3694.040 kb on + strandat 3694.069 kb on + strandat 3694.070 kb on - strandat 3694.153 kb on + strand, within ECD_03510at 3694.154 kb on - strand, within ECD_03510at 3694.305 kb on + strand, within ECD_03510at 3694.356 kb on + strand, within ECD_03510at 3694.368 kb on + strand, within ECD_03510at 3694.369 kb on - strand, within ECD_03510at 3694.369 kb on - strand, within ECD_03510at 3694.382 kb on - strand, within ECD_03510at 3694.473 kb on - strand, within ECD_03510at 3694.473 kb on - strand, within ECD_03510at 3694.526 kb on + strand, within ECD_03510at 3694.526 kb on + strand, within ECD_03510at 3694.603 kb on + strand, within ECD_03510at 3694.662 kb on + strand, within ECD_03510at 3694.719 kb on + strand, within ECD_03510at 3694.720 kb on - strand, within ECD_03510at 3694.720 kb on - strand, within ECD_03510at 3694.720 kb on - strand, within ECD_03510at 3694.737 kb on - strand, within ECD_03510at 3694.752 kb on + strand, within ECD_03510at 3694.752 kb on + strand, within ECD_03510at 3694.753 kb on - strand, within ECD_03510at 3694.756 kb on + strand, within ECD_03510at 3694.756 kb on + strand, within ECD_03510at 3694.756 kb on + strand, within ECD_03510at 3694.756 kb on + strand, within ECD_03510at 3694.756 kb on + strand, within ECD_03510at 3694.757 kb on - strand, within ECD_03510at 3694.757 kb on - strand, within ECD_03510at 3694.757 kb on - strand, within ECD_03510at 3694.757 kb on - strand, within ECD_03510at 3694.757 kb on - strand, within ECD_03510at 3694.757 kb on - strand, within ECD_03510at 3694.757 kb on - strand, within ECD_03510at 3694.757 kb on - strand, within ECD_03510at 3694.757 kb on - strand, within ECD_03510at 3694.759 kb on + strand, within ECD_03510at 3694.760 kb on - strand, within ECD_03510at 3694.760 kb on - strand, within ECD_03510at 3694.902 kb on + strandat 3694.965 kb on + strandat 3694.966 kb on - strandat 3694.972 kb on + strandat 3694.973 kb on - strandat 3694.973 kb on - strandat 3694.973 kb on - strandat 3695.000 kb on - strandat 3695.184 kb on + strand, within ECD_03511at 3695.185 kb on - strand, within ECD_03511at 3695.185 kb on - strand, within ECD_03511at 3695.185 kb on - strand, within ECD_03511at 3695.300 kb on + strand, within ECD_03511at 3695.300 kb on + strand, within ECD_03511at 3695.300 kb on + strand, within ECD_03511at 3695.468 kb on - strand, within ECD_03511at 3695.566 kb on + strand, within ECD_03511at 3695.599 kb on - strand, within ECD_03511at 3695.708 kb on - strand, within ECD_03511at 3695.749 kb on + strand, within ECD_03511at 3695.750 kb on - strand, within ECD_03511at 3695.750 kb on - strand, within ECD_03511at 3695.794 kb on + strand, within ECD_03511at 3695.795 kb on - strand, within ECD_03511at 3695.800 kb on + strand, within ECD_03511

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Per-strain Table

Position Strand Gene LocusTag Fraction Ox4
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3,693,073 - ECD_03509 0.51 -1.3
3,693,320 - ECD_03509 0.63 -0.8
3,693,344 + ECD_03509 0.64 -0.5
3,693,460 + ECD_03509 0.70 -2.4
3,693,461 - ECD_03509 0.70 -1.2
3,693,471 + ECD_03509 0.71 -1.6
3,693,472 - ECD_03509 0.71 -2.0
3,693,472 - ECD_03509 0.71 -1.6
3,693,472 - ECD_03509 0.71 -0.1
3,693,632 + ECD_03509 0.78 -1.7
3,693,699 + ECD_03509 0.82 -0.7
3,693,755 + ECD_03509 0.84 -1.3
3,693,756 - ECD_03509 0.84 -0.3
3,693,882 - +0.6
3,693,908 + -0.7
3,694,003 - +2.5
3,694,040 + +1.6
3,694,069 + +0.2
3,694,070 - -4.1
3,694,153 + ECD_03510 0.11 -0.2
3,694,154 - ECD_03510 0.11 -0.0
3,694,305 + ECD_03510 0.30 +0.5
3,694,356 + ECD_03510 0.36 -0.7
3,694,368 + ECD_03510 0.38 -0.3
3,694,369 - ECD_03510 0.38 -0.4
3,694,369 - ECD_03510 0.38 +0.6
3,694,382 - ECD_03510 0.39 -0.3
3,694,473 - ECD_03510 0.51 -1.1
3,694,473 - ECD_03510 0.51 +0.3
3,694,526 + ECD_03510 0.58 -0.3
3,694,526 + ECD_03510 0.58 +0.6
3,694,603 + ECD_03510 0.67 +1.2
3,694,662 + ECD_03510 0.75 +0.4
3,694,719 + ECD_03510 0.82 +0.7
3,694,720 - ECD_03510 0.82 -1.6
3,694,720 - ECD_03510 0.82 +0.4
3,694,720 - ECD_03510 0.82 -0.2
3,694,737 - ECD_03510 0.84 +0.4
3,694,752 + ECD_03510 0.86 +0.7
3,694,752 + ECD_03510 0.86 +1.3
3,694,753 - ECD_03510 0.86 +1.5
3,694,756 + ECD_03510 0.87 +0.3
3,694,756 + ECD_03510 0.87 -0.3
3,694,756 + ECD_03510 0.87 -1.2
3,694,756 + ECD_03510 0.87 +0.4
3,694,756 + ECD_03510 0.87 +1.2
3,694,757 - ECD_03510 0.87 -0.0
3,694,757 - ECD_03510 0.87 +0.1
3,694,757 - ECD_03510 0.87 +0.0
3,694,757 - ECD_03510 0.87 -0.4
3,694,757 - ECD_03510 0.87 -0.1
3,694,757 - ECD_03510 0.87 -0.7
3,694,757 - ECD_03510 0.87 -1.8
3,694,757 - ECD_03510 0.87 +1.0
3,694,757 - ECD_03510 0.87 -0.4
3,694,759 + ECD_03510 0.87 +0.2
3,694,760 - ECD_03510 0.87 +0.8
3,694,760 - ECD_03510 0.87 +0.1
3,694,902 + +1.0
3,694,965 + +3.7
3,694,966 - +2.0
3,694,972 + +1.0
3,694,973 - +1.0
3,694,973 - +1.4
3,694,973 - +1.7
3,695,000 - +1.1
3,695,184 + ECD_03511 0.20 +0.5
3,695,185 - ECD_03511 0.21 +1.5
3,695,185 - ECD_03511 0.21 +0.9
3,695,185 - ECD_03511 0.21 -0.0
3,695,300 + ECD_03511 0.30 +1.5
3,695,300 + ECD_03511 0.30 +2.4
3,695,300 + ECD_03511 0.30 +1.7
3,695,468 - ECD_03511 0.44 +2.4
3,695,566 + ECD_03511 0.52 +0.8
3,695,599 - ECD_03511 0.55 +1.3
3,695,708 - ECD_03511 0.64 +1.9
3,695,749 + ECD_03511 0.67 +0.8
3,695,750 - ECD_03511 0.67 +1.0
3,695,750 - ECD_03511 0.67 +0.4
3,695,794 + ECD_03511 0.71 +0.1
3,695,795 - ECD_03511 0.71 +0.6
3,695,800 + ECD_03511 0.72 +1.2

Or see this region's nucleotide sequence