Strain Fitness in Escherichia coli BL21 around ECD_03276

Experiment: Ox4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_03274 and ECD_03275 are separated by 16 nucleotidesECD_03275 and ECD_03276 are separated by 44 nucleotidesECD_03276 and ECD_03277 are separated by 189 nucleotides ECD_03274: ECD_03274 - DNA-binding transcriptional repressor, at 3,420,144 to 3,420,902 _03274 ECD_03275: ECD_03275 - rhomboid intramembrane serine protease, at 3,420,919 to 3,421,749 _03275 ECD_03276: ECD_03276 - thiosulfate:cyanide sulfurtransferase (rhodanese), at 3,421,794 to 3,422,120 _03276 ECD_03277: ECD_03277 - sn-glycerol-3-phosphate dehydrogenase, aerobic, FAD/NAD(P)-binding, at 3,422,310 to 3,423,815 _03277 Position (kb) 3421 3422 3423Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3420.847 kb on + strandat 3420.847 kb on + strandat 3420.847 kb on + strandat 3420.848 kb on - strandat 3420.848 kb on - strandat 3420.848 kb on - strandat 3420.875 kb on + strandat 3420.876 kb on - strandat 3420.876 kb on - strandat 3421.059 kb on + strand, within ECD_03275at 3421.080 kb on - strand, within ECD_03275at 3421.191 kb on - strand, within ECD_03275at 3421.218 kb on + strand, within ECD_03275at 3421.218 kb on + strand, within ECD_03275at 3421.222 kb on - strand, within ECD_03275at 3421.222 kb on - strand, within ECD_03275at 3421.228 kb on + strand, within ECD_03275at 3421.272 kb on - strand, within ECD_03275at 3421.272 kb on - strand, within ECD_03275at 3421.299 kb on + strand, within ECD_03275at 3421.300 kb on - strand, within ECD_03275at 3421.338 kb on - strand, within ECD_03275at 3421.388 kb on - strand, within ECD_03275at 3421.559 kb on + strand, within ECD_03275at 3421.559 kb on + strand, within ECD_03275at 3421.560 kb on - strand, within ECD_03275at 3421.654 kb on - strand, within ECD_03275at 3421.694 kb on + strandat 3421.695 kb on - strandat 3421.695 kb on - strandat 3421.695 kb on - strandat 3421.695 kb on - strandat 3421.695 kb on - strandat 3421.695 kb on - strandat 3421.738 kb on - strandat 3421.785 kb on + strandat 3421.785 kb on + strandat 3421.785 kb on + strandat 3421.785 kb on + strandat 3421.786 kb on - strandat 3421.787 kb on + strandat 3421.788 kb on - strandat 3421.859 kb on + strand, within ECD_03276at 3421.859 kb on + strand, within ECD_03276at 3421.860 kb on - strand, within ECD_03276at 3421.860 kb on - strand, within ECD_03276at 3421.861 kb on + strand, within ECD_03276at 3421.861 kb on + strand, within ECD_03276at 3421.862 kb on - strand, within ECD_03276at 3421.862 kb on - strand, within ECD_03276at 3421.892 kb on - strand, within ECD_03276at 3421.914 kb on - strand, within ECD_03276at 3421.914 kb on - strand, within ECD_03276at 3421.924 kb on + strand, within ECD_03276at 3421.959 kb on - strand, within ECD_03276at 3421.968 kb on - strand, within ECD_03276at 3422.100 kb on - strandat 3422.103 kb on - strandat 3422.103 kb on - strandat 3422.103 kb on - strandat 3422.136 kb on + strandat 3422.137 kb on - strandat 3422.168 kb on + strandat 3422.185 kb on + strandat 3422.185 kb on + strandat 3422.195 kb on - strandat 3422.200 kb on + strandat 3422.203 kb on - strandat 3422.203 kb on - strandat 3422.203 kb on - strandat 3422.206 kb on + strandat 3422.206 kb on + strandat 3422.207 kb on - strandat 3422.207 kb on - strandat 3422.207 kb on - strandat 3422.214 kb on + strandat 3422.256 kb on - strandat 3422.336 kb on - strandat 3422.472 kb on + strand, within ECD_03277at 3422.627 kb on + strand, within ECD_03277at 3422.627 kb on + strand, within ECD_03277at 3422.627 kb on + strand, within ECD_03277at 3422.631 kb on + strand, within ECD_03277at 3422.810 kb on + strand, within ECD_03277at 3422.816 kb on + strand, within ECD_03277at 3422.825 kb on + strand, within ECD_03277at 3422.825 kb on + strand, within ECD_03277at 3422.825 kb on + strand, within ECD_03277at 3422.826 kb on - strand, within ECD_03277at 3422.894 kb on + strand, within ECD_03277at 3423.045 kb on + strand, within ECD_03277at 3423.045 kb on + strand, within ECD_03277at 3423.046 kb on - strand, within ECD_03277at 3423.046 kb on - strand, within ECD_03277at 3423.071 kb on + strand, within ECD_03277at 3423.072 kb on - strand, within ECD_03277

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ox4
remove
3,420,847 + -1.5
3,420,847 + -0.3
3,420,847 + -0.5
3,420,848 - -0.7
3,420,848 - -0.2
3,420,848 - -0.5
3,420,875 + -0.3
3,420,876 - -0.3
3,420,876 - -0.7
3,421,059 + ECD_03275 0.17 -0.0
3,421,080 - ECD_03275 0.19 -0.4
3,421,191 - ECD_03275 0.33 +0.5
3,421,218 + ECD_03275 0.36 +0.5
3,421,218 + ECD_03275 0.36 +0.1
3,421,222 - ECD_03275 0.36 +0.3
3,421,222 - ECD_03275 0.36 -1.7
3,421,228 + ECD_03275 0.37 +0.5
3,421,272 - ECD_03275 0.42 -0.4
3,421,272 - ECD_03275 0.42 +0.9
3,421,299 + ECD_03275 0.46 +0.1
3,421,300 - ECD_03275 0.46 +0.0
3,421,338 - ECD_03275 0.50 +0.7
3,421,388 - ECD_03275 0.56 +1.3
3,421,559 + ECD_03275 0.77 -1.0
3,421,559 + ECD_03275 0.77 -1.2
3,421,560 - ECD_03275 0.77 -0.7
3,421,654 - ECD_03275 0.88 +0.9
3,421,694 + -1.1
3,421,695 - +0.3
3,421,695 - +0.8
3,421,695 - -0.0
3,421,695 - +0.5
3,421,695 - +0.8
3,421,695 - -0.4
3,421,738 - -1.3
3,421,785 + +0.1
3,421,785 + -1.2
3,421,785 + -0.9
3,421,785 + +0.2
3,421,786 - -0.6
3,421,787 + +0.6
3,421,788 - +0.8
3,421,859 + ECD_03276 0.20 +2.1
3,421,859 + ECD_03276 0.20 -0.8
3,421,860 - ECD_03276 0.20 +1.0
3,421,860 - ECD_03276 0.20 -2.7
3,421,861 + ECD_03276 0.20 +1.6
3,421,861 + ECD_03276 0.20 +0.9
3,421,862 - ECD_03276 0.21 +1.7
3,421,862 - ECD_03276 0.21 +1.6
3,421,892 - ECD_03276 0.30 +2.1
3,421,914 - ECD_03276 0.37 +1.2
3,421,914 - ECD_03276 0.37 +0.9
3,421,924 + ECD_03276 0.40 +1.4
3,421,959 - ECD_03276 0.50 +2.0
3,421,968 - ECD_03276 0.53 +1.8
3,422,100 - +1.3
3,422,103 - +0.1
3,422,103 - +2.5
3,422,103 - +1.2
3,422,136 + +1.2
3,422,137 - +0.1
3,422,168 + -0.3
3,422,185 + -0.4
3,422,185 + +0.8
3,422,195 - +1.1
3,422,200 + +0.7
3,422,203 - -0.1
3,422,203 - +0.4
3,422,203 - -0.5
3,422,206 + +0.2
3,422,206 + +0.1
3,422,207 - +1.2
3,422,207 - +0.8
3,422,207 - +0.2
3,422,214 + -0.0
3,422,256 - +1.4
3,422,336 - +3.5
3,422,472 + ECD_03277 0.11 -0.2
3,422,627 + ECD_03277 0.21 +0.6
3,422,627 + ECD_03277 0.21 +0.4
3,422,627 + ECD_03277 0.21 +1.0
3,422,631 + ECD_03277 0.21 +1.1
3,422,810 + ECD_03277 0.33 +2.2
3,422,816 + ECD_03277 0.34 +1.8
3,422,825 + ECD_03277 0.34 +2.2
3,422,825 + ECD_03277 0.34 +2.4
3,422,825 + ECD_03277 0.34 +1.1
3,422,826 - ECD_03277 0.34 +0.1
3,422,894 + ECD_03277 0.39 +0.1
3,423,045 + ECD_03277 0.49 +0.4
3,423,045 + ECD_03277 0.49 -0.3
3,423,046 - ECD_03277 0.49 +1.1
3,423,046 - ECD_03277 0.49 +1.7
3,423,071 + ECD_03277 0.51 +1.8
3,423,072 - ECD_03277 0.51 +1.1

Or see this region's nucleotide sequence