Experiment: Ox4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02892 and ECD_02893 are separated by 132 nucleotides ECD_02893 and ECD_02894 are separated by 1 nucleotides ECD_02894 and ECD_02895 are separated by 204 nucleotides ECD_02895 and ECD_02896 are separated by 52 nucleotides
ECD_02892: ECD_02892 - putative ABC transporter permease, at 3,033,548 to 3,035,155
_02892
ECD_02893: ECD_02893 - antitoxin for MqsR toxin; transcriptional repressor, at 3,035,288 to 3,035,683
_02893
ECD_02894: ECD_02894 - GCU-specific mRNA interferase toxin of the MqsR-MqsA toxin-antitoxin system; biofilm/motility regulator; anti-repressor, at 3,035,685 to 3,035,981
_02894
ECD_02895: ECD_02895 - transcriptional repressor for mcbR biofilm gene, at 3,036,186 to 3,036,668
_02895
ECD_02896: ECD_02896 - hydrogen peroxide and cadmium resistance periplasmic protein; stress-induced OB-fold protein, at 3,036,721 to 3,037,113
_02896
Position (kb)
3035
3036 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3034.700 kb on - strand, within ECD_02892 at 3034.700 kb on - strand, within ECD_02892 at 3034.723 kb on + strand, within ECD_02892 at 3034.723 kb on + strand, within ECD_02892 at 3034.723 kb on + strand, within ECD_02892 at 3034.723 kb on + strand, within ECD_02892 at 3034.724 kb on - strand, within ECD_02892 at 3034.724 kb on - strand, within ECD_02892 at 3034.877 kb on - strand, within ECD_02892 at 3035.046 kb on + strand at 3035.047 kb on - strand at 3035.117 kb on + strand at 3035.117 kb on + strand at 3035.149 kb on + strand at 3035.149 kb on + strand at 3035.151 kb on + strand at 3035.151 kb on + strand at 3035.151 kb on + strand at 3035.151 kb on + strand at 3035.151 kb on + strand at 3035.152 kb on - strand at 3035.152 kb on - strand at 3035.152 kb on - strand at 3035.152 kb on - strand at 3035.152 kb on - strand at 3035.177 kb on + strand at 3035.194 kb on + strand at 3035.397 kb on - strand, within ECD_02893 at 3035.397 kb on - strand, within ECD_02893 at 3035.397 kb on - strand, within ECD_02893 at 3035.397 kb on - strand, within ECD_02893 at 3035.463 kb on - strand, within ECD_02893 at 3035.514 kb on - strand, within ECD_02893 at 3035.514 kb on - strand, within ECD_02893 at 3035.514 kb on - strand, within ECD_02893 at 3035.514 kb on - strand, within ECD_02893 at 3035.786 kb on + strand, within ECD_02894 at 3035.787 kb on - strand, within ECD_02894 at 3035.789 kb on + strand, within ECD_02894 at 3035.790 kb on - strand, within ECD_02894 at 3035.790 kb on - strand, within ECD_02894 at 3035.790 kb on - strand, within ECD_02894 at 3035.801 kb on - strand, within ECD_02894 at 3035.801 kb on - strand, within ECD_02894 at 3035.817 kb on - strand, within ECD_02894 at 3035.852 kb on + strand, within ECD_02894 at 3035.853 kb on - strand, within ECD_02894 at 3035.858 kb on + strand, within ECD_02894 at 3035.859 kb on - strand, within ECD_02894 at 3035.903 kb on + strand, within ECD_02894 at 3035.903 kb on + strand, within ECD_02894 at 3035.960 kb on + strand at 3035.960 kb on + strand at 3035.960 kb on + strand at 3035.960 kb on + strand at 3035.960 kb on + strand at 3035.961 kb on - strand at 3035.961 kb on - strand at 3035.961 kb on - strand at 3036.047 kb on + strand at 3036.047 kb on + strand at 3036.066 kb on - strand at 3036.117 kb on + strand at 3036.117 kb on + strand at 3036.117 kb on + strand at 3036.117 kb on + strand at 3036.117 kb on + strand at 3036.117 kb on + strand at 3036.118 kb on - strand at 3036.118 kb on - strand at 3036.118 kb on - strand at 3036.118 kb on - strand at 3036.120 kb on - strand at 3036.121 kb on - strand at 3036.138 kb on + strand at 3036.164 kb on + strand at 3036.202 kb on + strand at 3036.202 kb on + strand at 3036.203 kb on - strand at 3036.203 kb on - strand at 3036.253 kb on + strand, within ECD_02895 at 3036.324 kb on + strand, within ECD_02895 at 3036.338 kb on + strand, within ECD_02895 at 3036.449 kb on + strand, within ECD_02895 at 3036.574 kb on + strand, within ECD_02895 at 3036.574 kb on + strand, within ECD_02895 at 3036.575 kb on - strand, within ECD_02895 at 3036.621 kb on + strand at 3036.622 kb on - strand at 3036.622 kb on - strand at 3036.646 kb on - strand at 3036.687 kb on + strand at 3036.861 kb on + strand, within ECD_02896 at 3036.862 kb on - strand, within ECD_02896 at 3036.865 kb on - strand, within ECD_02896 at 3036.887 kb on + strand, within ECD_02896 at 3036.887 kb on + strand, within ECD_02896 at 3036.887 kb on + strand, within ECD_02896 at 3036.888 kb on - strand, within ECD_02896 at 3036.888 kb on - strand, within ECD_02896 at 3036.888 kb on - strand, within ECD_02896 at 3036.888 kb on - strand, within ECD_02896 at 3036.888 kb on - strand, within ECD_02896 at 3036.888 kb on - strand, within ECD_02896 at 3036.967 kb on + strand, within ECD_02896 at 3036.967 kb on + strand, within ECD_02896 at 3036.968 kb on - strand, within ECD_02896 at 3036.968 kb on - strand, within ECD_02896
Per-strain Table
Position Strand Gene LocusTag Fraction Ox4 remove 3,034,700 - ECD_02892 0.72 -0.2 3,034,700 - ECD_02892 0.72 +3.2 3,034,723 + ECD_02892 0.73 +2.9 3,034,723 + ECD_02892 0.73 -1.1 3,034,723 + ECD_02892 0.73 -2.0 3,034,723 + ECD_02892 0.73 +0.0 3,034,724 - ECD_02892 0.73 -2.1 3,034,724 - ECD_02892 0.73 +2.7 3,034,877 - ECD_02892 0.83 +0.9 3,035,046 + -0.7 3,035,047 - +0.9 3,035,117 + +0.3 3,035,117 + -0.1 3,035,149 + -0.6 3,035,149 + +1.4 3,035,151 + -1.8 3,035,151 + -1.5 3,035,151 + -0.4 3,035,151 + -0.0 3,035,151 + -0.1 3,035,152 - -0.3 3,035,152 - -1.1 3,035,152 - -0.7 3,035,152 - -0.8 3,035,152 - -0.5 3,035,177 + -1.5 3,035,194 + -0.1 3,035,397 - ECD_02893 0.28 -1.0 3,035,397 - ECD_02893 0.28 +0.2 3,035,397 - ECD_02893 0.28 -0.0 3,035,397 - ECD_02893 0.28 +1.3 3,035,463 - ECD_02893 0.44 -1.0 3,035,514 - ECD_02893 0.57 +1.9 3,035,514 - ECD_02893 0.57 +2.6 3,035,514 - ECD_02893 0.57 +0.0 3,035,514 - ECD_02893 0.57 +1.6 3,035,786 + ECD_02894 0.34 -0.3 3,035,787 - ECD_02894 0.34 -1.2 3,035,789 + ECD_02894 0.35 -1.6 3,035,790 - ECD_02894 0.35 -0.6 3,035,790 - ECD_02894 0.35 -1.3 3,035,790 - ECD_02894 0.35 -1.7 3,035,801 - ECD_02894 0.39 -0.7 3,035,801 - ECD_02894 0.39 +0.7 3,035,817 - ECD_02894 0.44 -0.7 3,035,852 + ECD_02894 0.56 -0.5 3,035,853 - ECD_02894 0.57 -0.7 3,035,858 + ECD_02894 0.58 -0.2 3,035,859 - ECD_02894 0.59 -0.8 3,035,903 + ECD_02894 0.73 -2.6 3,035,903 + ECD_02894 0.73 +0.6 3,035,960 + -0.7 3,035,960 + -1.4 3,035,960 + -0.4 3,035,960 + -0.4 3,035,960 + -1.0 3,035,961 - -1.5 3,035,961 - -0.7 3,035,961 - +1.2 3,036,047 + +1.1 3,036,047 + -1.0 3,036,066 - -0.5 3,036,117 + -1.0 3,036,117 + -0.5 3,036,117 + -1.1 3,036,117 + -1.1 3,036,117 + -0.8 3,036,117 + -1.0 3,036,118 - +1.4 3,036,118 - +2.4 3,036,118 - -1.2 3,036,118 - -1.6 3,036,120 - -0.0 3,036,121 - -1.0 3,036,138 + -0.6 3,036,164 + +1.0 3,036,202 + +0.2 3,036,202 + +3.1 3,036,203 - -1.4 3,036,203 - -2.5 3,036,253 + ECD_02895 0.14 +0.5 3,036,324 + ECD_02895 0.29 -0.4 3,036,338 + ECD_02895 0.31 -1.9 3,036,449 + ECD_02895 0.54 +2.5 3,036,574 + ECD_02895 0.80 -0.8 3,036,574 + ECD_02895 0.80 +0.0 3,036,575 - ECD_02895 0.81 -0.6 3,036,621 + -0.7 3,036,622 - +0.6 3,036,622 - +2.9 3,036,646 - -0.7 3,036,687 + -0.7 3,036,861 + ECD_02896 0.36 -0.4 3,036,862 - ECD_02896 0.36 -1.1 3,036,865 - ECD_02896 0.37 -0.8 3,036,887 + ECD_02896 0.42 -0.3 3,036,887 + ECD_02896 0.42 -0.9 3,036,887 + ECD_02896 0.42 +0.4 3,036,888 - ECD_02896 0.42 -1.0 3,036,888 - ECD_02896 0.42 +0.5 3,036,888 - ECD_02896 0.42 -0.1 3,036,888 - ECD_02896 0.42 -0.7 3,036,888 - ECD_02896 0.42 +3.0 3,036,888 - ECD_02896 0.42 +1.5 3,036,967 + ECD_02896 0.63 +2.5 3,036,967 + ECD_02896 0.63 +1.5 3,036,968 - ECD_02896 0.63 +0.6 3,036,968 - ECD_02896 0.63 -0.9
Or see this region's nucleotide sequence