Experiment: Ox4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02838 and ECD_02839 are separated by 29 nucleotides ECD_02839 and ECD_02840 are separated by 146 nucleotides ECD_02840 and ECD_02841 are separated by 65 nucleotides
ECD_02838: ECD_02838 - putative type II secretion protein GspD, at 2,970,281 to 2,972,341
_02838
ECD_02839: ECD_02839 - putative secretion pathway protein, C-type protein, at 2,972,371 to 2,973,201
_02839
ECD_02840: ECD_02840 - secretin (GspDbeta) OM localization lipoprotein pilotin, at 2,973,348 to 2,973,758
_02840
ECD_02841: ECD_02841 - bifunctional prepilin leader peptidase/ methylase, at 2,973,824 to 2,974,633
_02841
Position (kb)
2972
2973
2974 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2971.443 kb on - strand, within ECD_02838 at 2971.792 kb on + strand, within ECD_02838 at 2971.792 kb on + strand, within ECD_02838 at 2971.793 kb on - strand, within ECD_02838 at 2971.793 kb on - strand, within ECD_02838 at 2971.793 kb on - strand, within ECD_02838 at 2971.816 kb on + strand, within ECD_02838 at 2971.817 kb on - strand, within ECD_02838 at 2971.888 kb on + strand, within ECD_02838 at 2971.888 kb on + strand, within ECD_02838 at 2971.889 kb on - strand, within ECD_02838 at 2971.889 kb on - strand, within ECD_02838 at 2971.889 kb on - strand, within ECD_02838 at 2971.893 kb on - strand, within ECD_02838 at 2971.901 kb on + strand, within ECD_02838 at 2971.929 kb on + strand, within ECD_02838 at 2971.930 kb on - strand, within ECD_02838 at 2972.018 kb on + strand, within ECD_02838 at 2972.029 kb on - strand, within ECD_02838 at 2972.057 kb on + strand, within ECD_02838 at 2972.057 kb on + strand, within ECD_02838 at 2972.058 kb on - strand, within ECD_02838 at 2972.064 kb on + strand, within ECD_02838 at 2972.065 kb on - strand, within ECD_02838 at 2972.068 kb on - strand, within ECD_02838 at 2972.323 kb on + strand at 2972.324 kb on - strand at 2972.324 kb on - strand at 2972.324 kb on - strand at 2972.413 kb on + strand at 2972.414 kb on - strand at 2972.447 kb on - strand at 2972.447 kb on - strand at 2972.595 kb on + strand, within ECD_02839 at 2972.596 kb on - strand, within ECD_02839 at 2972.618 kb on + strand, within ECD_02839 at 2972.618 kb on + strand, within ECD_02839 at 2972.618 kb on + strand, within ECD_02839 at 2972.619 kb on - strand, within ECD_02839 at 2972.619 kb on - strand, within ECD_02839 at 2972.619 kb on - strand, within ECD_02839 at 2972.619 kb on - strand, within ECD_02839 at 2972.805 kb on - strand, within ECD_02839 at 2972.879 kb on + strand, within ECD_02839 at 2972.880 kb on - strand, within ECD_02839 at 2972.955 kb on + strand, within ECD_02839 at 2972.956 kb on - strand, within ECD_02839 at 2972.996 kb on - strand, within ECD_02839 at 2973.018 kb on - strand, within ECD_02839 at 2973.046 kb on + strand, within ECD_02839 at 2973.142 kb on - strand at 2973.437 kb on + strand, within ECD_02840 at 2973.727 kb on - strand at 2973.781 kb on + strand at 2973.989 kb on + strand, within ECD_02841 at 2974.004 kb on + strand, within ECD_02841 at 2974.007 kb on + strand, within ECD_02841 at 2974.007 kb on + strand, within ECD_02841 at 2974.023 kb on - strand, within ECD_02841 at 2974.023 kb on - strand, within ECD_02841 at 2974.044 kb on - strand, within ECD_02841
Per-strain Table
Position Strand Gene LocusTag Fraction Ox4 remove 2,971,443 - ECD_02838 0.56 +3.0 2,971,792 + ECD_02838 0.73 +2.1 2,971,792 + ECD_02838 0.73 +1.3 2,971,793 - ECD_02838 0.73 +2.5 2,971,793 - ECD_02838 0.73 +1.9 2,971,793 - ECD_02838 0.73 +2.3 2,971,816 + ECD_02838 0.74 +2.3 2,971,817 - ECD_02838 0.75 +2.1 2,971,888 + ECD_02838 0.78 +1.0 2,971,888 + ECD_02838 0.78 +1.8 2,971,889 - ECD_02838 0.78 +1.5 2,971,889 - ECD_02838 0.78 +2.0 2,971,889 - ECD_02838 0.78 +0.7 2,971,893 - ECD_02838 0.78 +2.4 2,971,901 + ECD_02838 0.79 +1.7 2,971,929 + ECD_02838 0.80 +1.8 2,971,930 - ECD_02838 0.80 +1.7 2,972,018 + ECD_02838 0.84 +1.8 2,972,029 - ECD_02838 0.85 +2.4 2,972,057 + ECD_02838 0.86 +2.3 2,972,057 + ECD_02838 0.86 +1.8 2,972,058 - ECD_02838 0.86 +1.8 2,972,064 + ECD_02838 0.87 +0.0 2,972,065 - ECD_02838 0.87 +1.2 2,972,068 - ECD_02838 0.87 +2.0 2,972,323 + +1.0 2,972,324 - +1.5 2,972,324 - +1.5 2,972,324 - +1.8 2,972,413 + +1.6 2,972,414 - +1.0 2,972,447 - +1.3 2,972,447 - +1.7 2,972,595 + ECD_02839 0.27 +1.5 2,972,596 - ECD_02839 0.27 +1.1 2,972,618 + ECD_02839 0.30 +1.1 2,972,618 + ECD_02839 0.30 +2.0 2,972,618 + ECD_02839 0.30 +1.8 2,972,619 - ECD_02839 0.30 +0.3 2,972,619 - ECD_02839 0.30 -0.0 2,972,619 - ECD_02839 0.30 +1.6 2,972,619 - ECD_02839 0.30 +2.6 2,972,805 - ECD_02839 0.52 +2.5 2,972,879 + ECD_02839 0.61 +2.1 2,972,880 - ECD_02839 0.61 +2.1 2,972,955 + ECD_02839 0.70 +2.4 2,972,956 - ECD_02839 0.70 +2.0 2,972,996 - ECD_02839 0.75 +2.0 2,973,018 - ECD_02839 0.78 +1.5 2,973,046 + ECD_02839 0.81 +0.9 2,973,142 - +3.2 2,973,437 + ECD_02840 0.22 +2.7 2,973,727 - +1.6 2,973,781 + +1.9 2,973,989 + ECD_02841 0.20 +1.3 2,974,004 + ECD_02841 0.22 +2.0 2,974,007 + ECD_02841 0.23 +2.4 2,974,007 + ECD_02841 0.23 +1.5 2,974,023 - ECD_02841 0.25 +1.6 2,974,023 - ECD_02841 0.25 +1.6 2,974,044 - ECD_02841 0.27 +1.0
Or see this region's nucleotide sequence