Strain Fitness in Escherichia coli BL21 around ECD_02839

Experiment: Ox4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02838 and ECD_02839 are separated by 29 nucleotidesECD_02839 and ECD_02840 are separated by 146 nucleotidesECD_02840 and ECD_02841 are separated by 65 nucleotides ECD_02838: ECD_02838 - putative type II secretion protein GspD, at 2,970,281 to 2,972,341 _02838 ECD_02839: ECD_02839 - putative secretion pathway protein, C-type protein, at 2,972,371 to 2,973,201 _02839 ECD_02840: ECD_02840 - secretin (GspDbeta) OM localization lipoprotein pilotin, at 2,973,348 to 2,973,758 _02840 ECD_02841: ECD_02841 - bifunctional prepilin leader peptidase/ methylase, at 2,973,824 to 2,974,633 _02841 Position (kb) 2972 2973 2974Strain fitness (log2 ratio) -1 0 1 2 3at 2971.443 kb on - strand, within ECD_02838at 2971.792 kb on + strand, within ECD_02838at 2971.792 kb on + strand, within ECD_02838at 2971.793 kb on - strand, within ECD_02838at 2971.793 kb on - strand, within ECD_02838at 2971.793 kb on - strand, within ECD_02838at 2971.816 kb on + strand, within ECD_02838at 2971.817 kb on - strand, within ECD_02838at 2971.888 kb on + strand, within ECD_02838at 2971.888 kb on + strand, within ECD_02838at 2971.889 kb on - strand, within ECD_02838at 2971.889 kb on - strand, within ECD_02838at 2971.889 kb on - strand, within ECD_02838at 2971.893 kb on - strand, within ECD_02838at 2971.901 kb on + strand, within ECD_02838at 2971.929 kb on + strand, within ECD_02838at 2971.930 kb on - strand, within ECD_02838at 2972.018 kb on + strand, within ECD_02838at 2972.029 kb on - strand, within ECD_02838at 2972.057 kb on + strand, within ECD_02838at 2972.057 kb on + strand, within ECD_02838at 2972.058 kb on - strand, within ECD_02838at 2972.064 kb on + strand, within ECD_02838at 2972.065 kb on - strand, within ECD_02838at 2972.068 kb on - strand, within ECD_02838at 2972.323 kb on + strandat 2972.324 kb on - strandat 2972.324 kb on - strandat 2972.324 kb on - strandat 2972.413 kb on + strandat 2972.414 kb on - strandat 2972.447 kb on - strandat 2972.447 kb on - strandat 2972.595 kb on + strand, within ECD_02839at 2972.596 kb on - strand, within ECD_02839at 2972.618 kb on + strand, within ECD_02839at 2972.618 kb on + strand, within ECD_02839at 2972.618 kb on + strand, within ECD_02839at 2972.619 kb on - strand, within ECD_02839at 2972.619 kb on - strand, within ECD_02839at 2972.619 kb on - strand, within ECD_02839at 2972.619 kb on - strand, within ECD_02839at 2972.805 kb on - strand, within ECD_02839at 2972.879 kb on + strand, within ECD_02839at 2972.880 kb on - strand, within ECD_02839at 2972.955 kb on + strand, within ECD_02839at 2972.956 kb on - strand, within ECD_02839at 2972.996 kb on - strand, within ECD_02839at 2973.018 kb on - strand, within ECD_02839at 2973.046 kb on + strand, within ECD_02839at 2973.142 kb on - strandat 2973.437 kb on + strand, within ECD_02840at 2973.727 kb on - strandat 2973.781 kb on + strandat 2973.989 kb on + strand, within ECD_02841at 2974.004 kb on + strand, within ECD_02841at 2974.007 kb on + strand, within ECD_02841at 2974.007 kb on + strand, within ECD_02841at 2974.023 kb on - strand, within ECD_02841at 2974.023 kb on - strand, within ECD_02841at 2974.044 kb on - strand, within ECD_02841

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Per-strain Table

Position Strand Gene LocusTag Fraction Ox4
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2,971,443 - ECD_02838 0.56 +3.0
2,971,792 + ECD_02838 0.73 +2.1
2,971,792 + ECD_02838 0.73 +1.3
2,971,793 - ECD_02838 0.73 +2.5
2,971,793 - ECD_02838 0.73 +1.9
2,971,793 - ECD_02838 0.73 +2.3
2,971,816 + ECD_02838 0.74 +2.3
2,971,817 - ECD_02838 0.75 +2.1
2,971,888 + ECD_02838 0.78 +1.0
2,971,888 + ECD_02838 0.78 +1.8
2,971,889 - ECD_02838 0.78 +1.5
2,971,889 - ECD_02838 0.78 +2.0
2,971,889 - ECD_02838 0.78 +0.7
2,971,893 - ECD_02838 0.78 +2.4
2,971,901 + ECD_02838 0.79 +1.7
2,971,929 + ECD_02838 0.80 +1.8
2,971,930 - ECD_02838 0.80 +1.7
2,972,018 + ECD_02838 0.84 +1.8
2,972,029 - ECD_02838 0.85 +2.4
2,972,057 + ECD_02838 0.86 +2.3
2,972,057 + ECD_02838 0.86 +1.8
2,972,058 - ECD_02838 0.86 +1.8
2,972,064 + ECD_02838 0.87 +0.0
2,972,065 - ECD_02838 0.87 +1.2
2,972,068 - ECD_02838 0.87 +2.0
2,972,323 + +1.0
2,972,324 - +1.5
2,972,324 - +1.5
2,972,324 - +1.8
2,972,413 + +1.6
2,972,414 - +1.0
2,972,447 - +1.3
2,972,447 - +1.7
2,972,595 + ECD_02839 0.27 +1.5
2,972,596 - ECD_02839 0.27 +1.1
2,972,618 + ECD_02839 0.30 +1.1
2,972,618 + ECD_02839 0.30 +2.0
2,972,618 + ECD_02839 0.30 +1.8
2,972,619 - ECD_02839 0.30 +0.3
2,972,619 - ECD_02839 0.30 -0.0
2,972,619 - ECD_02839 0.30 +1.6
2,972,619 - ECD_02839 0.30 +2.6
2,972,805 - ECD_02839 0.52 +2.5
2,972,879 + ECD_02839 0.61 +2.1
2,972,880 - ECD_02839 0.61 +2.1
2,972,955 + ECD_02839 0.70 +2.4
2,972,956 - ECD_02839 0.70 +2.0
2,972,996 - ECD_02839 0.75 +2.0
2,973,018 - ECD_02839 0.78 +1.5
2,973,046 + ECD_02839 0.81 +0.9
2,973,142 - +3.2
2,973,437 + ECD_02840 0.22 +2.7
2,973,727 - +1.6
2,973,781 + +1.9
2,973,989 + ECD_02841 0.20 +1.3
2,974,004 + ECD_02841 0.22 +2.0
2,974,007 + ECD_02841 0.23 +2.4
2,974,007 + ECD_02841 0.23 +1.5
2,974,023 - ECD_02841 0.25 +1.6
2,974,023 - ECD_02841 0.25 +1.6
2,974,044 - ECD_02841 0.27 +1.0

Or see this region's nucleotide sequence