Experiment: Ox4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02403 and ECD_02404 are separated by 117 nucleotides ECD_02404 and ECD_02405 are separated by 10 nucleotides ECD_02405 and ECD_02406 are separated by 17 nucleotides
ECD_02403: ECD_02403 - GTPase; multicopy suppressor of ftsJ, at 2,500,364 to 2,501,836
_02403
ECD_02404: ECD_02404 - BamABCDE complex OM biogenesis lipoprotein, at 2,501,954 to 2,503,132
_02404
ECD_02405: ECD_02405 - ancillary SecYEG translocon subunit; putative anti-RcsB factor, at 2,503,143 to 2,503,763
_02405
ECD_02406: ECD_02406 - histidyl tRNA synthetase, at 2,503,781 to 2,505,055
_02406
Position (kb)
2501
2502
2503
2504 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2501.857 kb on - strand at 2501.879 kb on - strand at 2501.896 kb on - strand at 2501.963 kb on - strand at 2501.963 kb on - strand at 2501.963 kb on - strand at 2501.963 kb on - strand at 2502.136 kb on - strand, within ECD_02404 at 2502.345 kb on + strand, within ECD_02404 at 2502.346 kb on - strand, within ECD_02404 at 2502.621 kb on - strand, within ECD_02404 at 2502.766 kb on - strand, within ECD_02404 at 2503.197 kb on - strand at 2503.230 kb on - strand, within ECD_02405 at 2503.453 kb on - strand, within ECD_02405 at 2503.508 kb on - strand, within ECD_02405 at 2503.512 kb on - strand, within ECD_02405
Per-strain Table
Position Strand Gene LocusTag Fraction Ox4 remove 2,501,857 - +0.2 2,501,879 - +0.3 2,501,896 - -0.1 2,501,963 - -1.1 2,501,963 - -1.3 2,501,963 - -1.4 2,501,963 - +0.2 2,502,136 - ECD_02404 0.15 +3.0 2,502,345 + ECD_02404 0.33 +0.9 2,502,346 - ECD_02404 0.33 +1.6 2,502,621 - ECD_02404 0.57 +2.5 2,502,766 - ECD_02404 0.69 +2.0 2,503,197 - +0.5 2,503,230 - ECD_02405 0.14 -0.5 2,503,453 - ECD_02405 0.50 -0.4 2,503,508 - ECD_02405 0.59 -2.2 2,503,512 - ECD_02405 0.59 -1.5
Or see this region's nucleotide sequence