Experiment: Ox4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02148 and ECD_02149 overlap by 1 nucleotides ECD_02149 and ECD_02150 overlap by 4 nucleotides ECD_02150 and ECD_02151 are separated by 30 nucleotides
ECD_02148: ECD_02148 - acetyl-CoA:acetoacetyl-CoA transferase, alpha subunit, at 2,213,808 to 2,214,470
_02148
ECD_02149: ECD_02149 - acetyl-CoA:acetoacetyl-CoA transferase, beta subunit, at 2,214,470 to 2,215,120
_02149
ECD_02150: ECD_02150 - short chain fatty acid transporter, at 2,215,117 to 2,216,439
_02150
ECD_02151: ECD_02151 - acetyl-CoA acetyltransferase, at 2,216,470 to 2,217,654
_02151
Position (kb)
2215
2216
2217 Strain fitness (log2 ratio)
-1
0
1
2 at 2214.307 kb on - strand, within ECD_02148 at 2214.356 kb on + strand, within ECD_02148 at 2214.589 kb on + strand, within ECD_02149 at 2214.590 kb on - strand, within ECD_02149 at 2214.590 kb on - strand, within ECD_02149 at 2214.997 kb on + strand, within ECD_02149 at 2215.099 kb on + strand at 2215.116 kb on + strand at 2215.117 kb on - strand at 2215.314 kb on + strand, within ECD_02150 at 2215.971 kb on - strand, within ECD_02150 at 2215.975 kb on - strand, within ECD_02150 at 2215.975 kb on - strand, within ECD_02150 at 2215.991 kb on - strand, within ECD_02150 at 2215.992 kb on + strand, within ECD_02150 at 2216.053 kb on + strand, within ECD_02150 at 2216.054 kb on - strand, within ECD_02150 at 2216.175 kb on + strand, within ECD_02150 at 2216.378 kb on - strand at 2216.503 kb on - strand at 2216.571 kb on + strand at 2216.572 kb on - strand at 2216.640 kb on - strand, within ECD_02151 at 2216.729 kb on + strand, within ECD_02151 at 2216.836 kb on + strand, within ECD_02151 at 2217.011 kb on + strand, within ECD_02151 at 2217.011 kb on + strand, within ECD_02151 at 2217.012 kb on - strand, within ECD_02151 at 2217.058 kb on - strand, within ECD_02151
Per-strain Table
Position Strand Gene LocusTag Fraction Ox4 remove 2,214,307 - ECD_02148 0.75 +0.8 2,214,356 + ECD_02148 0.83 -0.0 2,214,589 + ECD_02149 0.18 -0.0 2,214,590 - ECD_02149 0.18 +0.6 2,214,590 - ECD_02149 0.18 -0.3 2,214,997 + ECD_02149 0.81 +0.5 2,215,099 + +1.3 2,215,116 + +0.6 2,215,117 - -0.2 2,215,314 + ECD_02150 0.15 +0.3 2,215,971 - ECD_02150 0.65 -1.3 2,215,975 - ECD_02150 0.65 -0.2 2,215,975 - ECD_02150 0.65 +0.2 2,215,991 - ECD_02150 0.66 -0.8 2,215,992 + ECD_02150 0.66 -0.4 2,216,053 + ECD_02150 0.71 +0.5 2,216,054 - ECD_02150 0.71 -0.5 2,216,175 + ECD_02150 0.80 +0.4 2,216,378 - -0.1 2,216,503 - +1.4 2,216,571 + +0.6 2,216,572 - -1.7 2,216,640 - ECD_02151 0.14 +1.2 2,216,729 + ECD_02151 0.22 +0.0 2,216,836 + ECD_02151 0.31 +0.5 2,217,011 + ECD_02151 0.46 +0.9 2,217,011 + ECD_02151 0.46 -0.4 2,217,012 - ECD_02151 0.46 +1.8 2,217,058 - ECD_02151 0.50 +0.2
Or see this region's nucleotide sequence