Strain Fitness in Escherichia coli BL21 around ECD_02085

Experiment: Ox4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02084 and ECD_02085 are separated by 293 nucleotidesECD_02085 and ECD_02086 are separated by 204 nucleotides ECD_02084: ECD_02084 - colicin IA outer membrane receptor and translocator; ferric iron-catecholate transporter, at 2,139,677 to 2,141,668 _02084 ECD_02085: ECD_02085 - lysine transporter, at 2,141,962 to 2,143,431 _02085 ECD_02086: ECD_02086 - putative DNA-binding transcriptional regulator, at 2,143,636 to 2,144,517 _02086 Position (kb) 2141 2142 2143 2144Strain fitness (log2 ratio) -1 0 1 2at 2141.118 kb on + strand, within ECD_02084at 2141.119 kb on - strand, within ECD_02084at 2141.214 kb on - strand, within ECD_02084at 2141.377 kb on - strand, within ECD_02084at 2141.398 kb on + strand, within ECD_02084at 2141.963 kb on + strandat 2142.000 kb on - strandat 2142.045 kb on + strandat 2142.072 kb on - strandat 2142.072 kb on - strandat 2142.072 kb on - strandat 2142.123 kb on - strand, within ECD_02085at 2142.230 kb on - strand, within ECD_02085at 2142.323 kb on - strand, within ECD_02085at 2142.384 kb on - strand, within ECD_02085at 2142.462 kb on - strand, within ECD_02085at 2142.462 kb on - strand, within ECD_02085at 2142.462 kb on - strand, within ECD_02085at 2142.475 kb on - strand, within ECD_02085at 2142.483 kb on - strand, within ECD_02085at 2142.483 kb on - strand, within ECD_02085at 2142.483 kb on - strand, within ECD_02085at 2142.483 kb on - strand, within ECD_02085at 2142.483 kb on - strand, within ECD_02085at 2142.483 kb on - strand, within ECD_02085at 2142.483 kb on - strand, within ECD_02085at 2142.483 kb on - strand, within ECD_02085at 2142.483 kb on - strand, within ECD_02085at 2142.483 kb on - strand, within ECD_02085at 2142.483 kb on - strand, within ECD_02085at 2142.483 kb on - strand, within ECD_02085at 2142.483 kb on - strand, within ECD_02085at 2142.675 kb on - strand, within ECD_02085at 2142.675 kb on - strand, within ECD_02085at 2142.707 kb on - strand, within ECD_02085at 2142.799 kb on - strand, within ECD_02085at 2142.799 kb on - strand, within ECD_02085at 2142.799 kb on - strand, within ECD_02085at 2142.799 kb on - strand, within ECD_02085at 2142.922 kb on - strand, within ECD_02085at 2142.930 kb on + strand, within ECD_02085at 2142.931 kb on - strand, within ECD_02085at 2142.996 kb on - strand, within ECD_02085at 2142.996 kb on - strand, within ECD_02085at 2143.105 kb on - strand, within ECD_02085at 2143.122 kb on - strand, within ECD_02085at 2143.122 kb on - strand, within ECD_02085at 2143.167 kb on - strand, within ECD_02085at 2143.167 kb on - strand, within ECD_02085at 2143.167 kb on - strand, within ECD_02085at 2143.179 kb on - strand, within ECD_02085at 2143.207 kb on - strand, within ECD_02085at 2143.207 kb on - strand, within ECD_02085at 2143.207 kb on - strand, within ECD_02085at 2143.209 kb on - strand, within ECD_02085at 2143.209 kb on - strand, within ECD_02085at 2143.209 kb on - strand, within ECD_02085at 2143.209 kb on - strand, within ECD_02085at 2143.209 kb on - strand, within ECD_02085at 2143.209 kb on - strand, within ECD_02085at 2143.209 kb on - strand, within ECD_02085at 2143.209 kb on - strand, within ECD_02085at 2143.209 kb on - strand, within ECD_02085at 2143.267 kb on - strand, within ECD_02085at 2143.394 kb on - strandat 2143.512 kb on + strandat 2143.543 kb on - strandat 2143.714 kb on + strandat 2143.715 kb on - strandat 2143.715 kb on - strandat 2143.715 kb on - strandat 2143.715 kb on - strandat 2143.729 kb on - strand, within ECD_02086at 2143.865 kb on - strand, within ECD_02086at 2143.907 kb on - strand, within ECD_02086at 2143.910 kb on + strand, within ECD_02086at 2143.911 kb on - strand, within ECD_02086at 2144.214 kb on - strand, within ECD_02086at 2144.227 kb on - strand, within ECD_02086at 2144.238 kb on - strand, within ECD_02086at 2144.238 kb on - strand, within ECD_02086

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Per-strain Table

Position Strand Gene LocusTag Fraction Ox4
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2,141,118 + ECD_02084 0.72 +0.2
2,141,119 - ECD_02084 0.72 +0.3
2,141,214 - ECD_02084 0.77 -0.4
2,141,377 - ECD_02084 0.85 -0.2
2,141,398 + ECD_02084 0.86 +0.8
2,141,963 + +0.8
2,142,000 - +0.2
2,142,045 + +0.7
2,142,072 - +2.6
2,142,072 - +2.1
2,142,072 - +2.4
2,142,123 - ECD_02085 0.11 +0.4
2,142,230 - ECD_02085 0.18 +1.6
2,142,323 - ECD_02085 0.25 +0.9
2,142,384 - ECD_02085 0.29 +1.3
2,142,462 - ECD_02085 0.34 +0.7
2,142,462 - ECD_02085 0.34 +0.6
2,142,462 - ECD_02085 0.34 +1.2
2,142,475 - ECD_02085 0.35 +1.3
2,142,483 - ECD_02085 0.35 +0.8
2,142,483 - ECD_02085 0.35 +1.8
2,142,483 - ECD_02085 0.35 +0.5
2,142,483 - ECD_02085 0.35 +1.7
2,142,483 - ECD_02085 0.35 +1.3
2,142,483 - ECD_02085 0.35 +0.3
2,142,483 - ECD_02085 0.35 +1.8
2,142,483 - ECD_02085 0.35 +0.8
2,142,483 - ECD_02085 0.35 +2.7
2,142,483 - ECD_02085 0.35 +1.1
2,142,483 - ECD_02085 0.35 +1.2
2,142,483 - ECD_02085 0.35 +2.1
2,142,483 - ECD_02085 0.35 +2.3
2,142,675 - ECD_02085 0.49 -0.6
2,142,675 - ECD_02085 0.49 +0.5
2,142,707 - ECD_02085 0.51 +0.9
2,142,799 - ECD_02085 0.57 +0.6
2,142,799 - ECD_02085 0.57 +0.6
2,142,799 - ECD_02085 0.57 +2.2
2,142,799 - ECD_02085 0.57 +2.3
2,142,922 - ECD_02085 0.65 +0.9
2,142,930 + ECD_02085 0.66 +0.8
2,142,931 - ECD_02085 0.66 +0.8
2,142,996 - ECD_02085 0.70 +0.5
2,142,996 - ECD_02085 0.70 +1.0
2,143,105 - ECD_02085 0.78 +0.4
2,143,122 - ECD_02085 0.79 +1.3
2,143,122 - ECD_02085 0.79 +0.5
2,143,167 - ECD_02085 0.82 +1.0
2,143,167 - ECD_02085 0.82 +1.1
2,143,167 - ECD_02085 0.82 +1.8
2,143,179 - ECD_02085 0.83 +1.5
2,143,207 - ECD_02085 0.85 +1.1
2,143,207 - ECD_02085 0.85 +0.9
2,143,207 - ECD_02085 0.85 +0.9
2,143,209 - ECD_02085 0.85 +1.6
2,143,209 - ECD_02085 0.85 -0.5
2,143,209 - ECD_02085 0.85 +1.2
2,143,209 - ECD_02085 0.85 +1.4
2,143,209 - ECD_02085 0.85 +1.7
2,143,209 - ECD_02085 0.85 +1.2
2,143,209 - ECD_02085 0.85 +0.7
2,143,209 - ECD_02085 0.85 +1.3
2,143,209 - ECD_02085 0.85 +1.5
2,143,267 - ECD_02085 0.89 +1.4
2,143,394 - +1.3
2,143,512 + +0.1
2,143,543 - +0.7
2,143,714 + +0.6
2,143,715 - +0.3
2,143,715 - +0.7
2,143,715 - -0.6
2,143,715 - -0.3
2,143,729 - ECD_02086 0.11 +0.1
2,143,865 - ECD_02086 0.26 +0.1
2,143,907 - ECD_02086 0.31 -0.2
2,143,910 + ECD_02086 0.31 +0.3
2,143,911 - ECD_02086 0.31 +0.1
2,144,214 - ECD_02086 0.66 +0.5
2,144,227 - ECD_02086 0.67 +0.6
2,144,238 - ECD_02086 0.68 +0.2
2,144,238 - ECD_02086 0.68 -0.6

Or see this region's nucleotide sequence