Experiment: Ox4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02084 and ECD_02085 are separated by 293 nucleotides ECD_02085 and ECD_02086 are separated by 204 nucleotides
ECD_02084: ECD_02084 - colicin IA outer membrane receptor and translocator; ferric iron-catecholate transporter, at 2,139,677 to 2,141,668
_02084
ECD_02085: ECD_02085 - lysine transporter, at 2,141,962 to 2,143,431
_02085
ECD_02086: ECD_02086 - putative DNA-binding transcriptional regulator, at 2,143,636 to 2,144,517
_02086
Position (kb)
2141
2142
2143
2144 Strain fitness (log2 ratio)
-1
0
1
2 at 2141.118 kb on + strand, within ECD_02084 at 2141.119 kb on - strand, within ECD_02084 at 2141.214 kb on - strand, within ECD_02084 at 2141.377 kb on - strand, within ECD_02084 at 2141.398 kb on + strand, within ECD_02084 at 2141.963 kb on + strand at 2142.000 kb on - strand at 2142.045 kb on + strand at 2142.072 kb on - strand at 2142.072 kb on - strand at 2142.072 kb on - strand at 2142.123 kb on - strand, within ECD_02085 at 2142.230 kb on - strand, within ECD_02085 at 2142.323 kb on - strand, within ECD_02085 at 2142.384 kb on - strand, within ECD_02085 at 2142.462 kb on - strand, within ECD_02085 at 2142.462 kb on - strand, within ECD_02085 at 2142.462 kb on - strand, within ECD_02085 at 2142.475 kb on - strand, within ECD_02085 at 2142.483 kb on - strand, within ECD_02085 at 2142.483 kb on - strand, within ECD_02085 at 2142.483 kb on - strand, within ECD_02085 at 2142.483 kb on - strand, within ECD_02085 at 2142.483 kb on - strand, within ECD_02085 at 2142.483 kb on - strand, within ECD_02085 at 2142.483 kb on - strand, within ECD_02085 at 2142.483 kb on - strand, within ECD_02085 at 2142.483 kb on - strand, within ECD_02085 at 2142.483 kb on - strand, within ECD_02085 at 2142.483 kb on - strand, within ECD_02085 at 2142.483 kb on - strand, within ECD_02085 at 2142.483 kb on - strand, within ECD_02085 at 2142.675 kb on - strand, within ECD_02085 at 2142.675 kb on - strand, within ECD_02085 at 2142.707 kb on - strand, within ECD_02085 at 2142.799 kb on - strand, within ECD_02085 at 2142.799 kb on - strand, within ECD_02085 at 2142.799 kb on - strand, within ECD_02085 at 2142.799 kb on - strand, within ECD_02085 at 2142.922 kb on - strand, within ECD_02085 at 2142.930 kb on + strand, within ECD_02085 at 2142.931 kb on - strand, within ECD_02085 at 2142.996 kb on - strand, within ECD_02085 at 2142.996 kb on - strand, within ECD_02085 at 2143.105 kb on - strand, within ECD_02085 at 2143.122 kb on - strand, within ECD_02085 at 2143.122 kb on - strand, within ECD_02085 at 2143.167 kb on - strand, within ECD_02085 at 2143.167 kb on - strand, within ECD_02085 at 2143.167 kb on - strand, within ECD_02085 at 2143.179 kb on - strand, within ECD_02085 at 2143.207 kb on - strand, within ECD_02085 at 2143.207 kb on - strand, within ECD_02085 at 2143.207 kb on - strand, within ECD_02085 at 2143.209 kb on - strand, within ECD_02085 at 2143.209 kb on - strand, within ECD_02085 at 2143.209 kb on - strand, within ECD_02085 at 2143.209 kb on - strand, within ECD_02085 at 2143.209 kb on - strand, within ECD_02085 at 2143.209 kb on - strand, within ECD_02085 at 2143.209 kb on - strand, within ECD_02085 at 2143.209 kb on - strand, within ECD_02085 at 2143.209 kb on - strand, within ECD_02085 at 2143.267 kb on - strand, within ECD_02085 at 2143.394 kb on - strand at 2143.512 kb on + strand at 2143.543 kb on - strand at 2143.714 kb on + strand at 2143.715 kb on - strand at 2143.715 kb on - strand at 2143.715 kb on - strand at 2143.715 kb on - strand at 2143.729 kb on - strand, within ECD_02086 at 2143.865 kb on - strand, within ECD_02086 at 2143.907 kb on - strand, within ECD_02086 at 2143.910 kb on + strand, within ECD_02086 at 2143.911 kb on - strand, within ECD_02086 at 2144.214 kb on - strand, within ECD_02086 at 2144.227 kb on - strand, within ECD_02086 at 2144.238 kb on - strand, within ECD_02086 at 2144.238 kb on - strand, within ECD_02086
Per-strain Table
Position Strand Gene LocusTag Fraction Ox4 remove 2,141,118 + ECD_02084 0.72 +0.2 2,141,119 - ECD_02084 0.72 +0.3 2,141,214 - ECD_02084 0.77 -0.4 2,141,377 - ECD_02084 0.85 -0.2 2,141,398 + ECD_02084 0.86 +0.8 2,141,963 + +0.8 2,142,000 - +0.2 2,142,045 + +0.7 2,142,072 - +2.6 2,142,072 - +2.1 2,142,072 - +2.4 2,142,123 - ECD_02085 0.11 +0.4 2,142,230 - ECD_02085 0.18 +1.6 2,142,323 - ECD_02085 0.25 +0.9 2,142,384 - ECD_02085 0.29 +1.3 2,142,462 - ECD_02085 0.34 +0.7 2,142,462 - ECD_02085 0.34 +0.6 2,142,462 - ECD_02085 0.34 +1.2 2,142,475 - ECD_02085 0.35 +1.3 2,142,483 - ECD_02085 0.35 +0.8 2,142,483 - ECD_02085 0.35 +1.8 2,142,483 - ECD_02085 0.35 +0.5 2,142,483 - ECD_02085 0.35 +1.7 2,142,483 - ECD_02085 0.35 +1.3 2,142,483 - ECD_02085 0.35 +0.3 2,142,483 - ECD_02085 0.35 +1.8 2,142,483 - ECD_02085 0.35 +0.8 2,142,483 - ECD_02085 0.35 +2.7 2,142,483 - ECD_02085 0.35 +1.1 2,142,483 - ECD_02085 0.35 +1.2 2,142,483 - ECD_02085 0.35 +2.1 2,142,483 - ECD_02085 0.35 +2.3 2,142,675 - ECD_02085 0.49 -0.6 2,142,675 - ECD_02085 0.49 +0.5 2,142,707 - ECD_02085 0.51 +0.9 2,142,799 - ECD_02085 0.57 +0.6 2,142,799 - ECD_02085 0.57 +0.6 2,142,799 - ECD_02085 0.57 +2.2 2,142,799 - ECD_02085 0.57 +2.3 2,142,922 - ECD_02085 0.65 +0.9 2,142,930 + ECD_02085 0.66 +0.8 2,142,931 - ECD_02085 0.66 +0.8 2,142,996 - ECD_02085 0.70 +0.5 2,142,996 - ECD_02085 0.70 +1.0 2,143,105 - ECD_02085 0.78 +0.4 2,143,122 - ECD_02085 0.79 +1.3 2,143,122 - ECD_02085 0.79 +0.5 2,143,167 - ECD_02085 0.82 +1.0 2,143,167 - ECD_02085 0.82 +1.1 2,143,167 - ECD_02085 0.82 +1.8 2,143,179 - ECD_02085 0.83 +1.5 2,143,207 - ECD_02085 0.85 +1.1 2,143,207 - ECD_02085 0.85 +0.9 2,143,207 - ECD_02085 0.85 +0.9 2,143,209 - ECD_02085 0.85 +1.6 2,143,209 - ECD_02085 0.85 -0.5 2,143,209 - ECD_02085 0.85 +1.2 2,143,209 - ECD_02085 0.85 +1.4 2,143,209 - ECD_02085 0.85 +1.7 2,143,209 - ECD_02085 0.85 +1.2 2,143,209 - ECD_02085 0.85 +0.7 2,143,209 - ECD_02085 0.85 +1.3 2,143,209 - ECD_02085 0.85 +1.5 2,143,267 - ECD_02085 0.89 +1.4 2,143,394 - +1.3 2,143,512 + +0.1 2,143,543 - +0.7 2,143,714 + +0.6 2,143,715 - +0.3 2,143,715 - +0.7 2,143,715 - -0.6 2,143,715 - -0.3 2,143,729 - ECD_02086 0.11 +0.1 2,143,865 - ECD_02086 0.26 +0.1 2,143,907 - ECD_02086 0.31 -0.2 2,143,910 + ECD_02086 0.31 +0.3 2,143,911 - ECD_02086 0.31 +0.1 2,144,214 - ECD_02086 0.66 +0.5 2,144,227 - ECD_02086 0.67 +0.6 2,144,238 - ECD_02086 0.68 +0.2 2,144,238 - ECD_02086 0.68 -0.6
Or see this region's nucleotide sequence