Experiment: Ox4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01817 and ECD_01818 are separated by 326 nucleotides ECD_01818 and ECD_01819 are separated by 66 nucleotides ECD_01819 and ECD_01820 are separated by 133 nucleotides
ECD_01817: ECD_01817 - DUF533 family inner membrane protein, at 1,874,772 to 1,875,431
_01817
ECD_01818: ECD_01818 - extracellular Colicin M immunity family protein, at 1,875,758 to 1,876,114
_01818
ECD_01819: ECD_01819 - DNA damage-inducible protein regulated by LexA, at 1,876,181 to 1,876,471
_01819
ECD_01820: ECD_01820 - phosphoribosylglycinamide formyltransferase 2, at 1,876,605 to 1,877,783
_01820
Position (kb) 1876
1877 Strain fitness (log2 ratio) -1
0
1 at 1875.830 kb on - strand, within ECD_01818 at 1876.449 kb on - strand at 1876.453 kb on - strand at 1876.654 kb on + strand at 1876.655 kb on - strand at 1876.657 kb on + strand at 1876.784 kb on + strand, within ECD_01820 at 1876.838 kb on + strand, within ECD_01820 at 1876.838 kb on + strand, within ECD_01820 at 1876.860 kb on - strand, within ECD_01820
Per-strain Table
Position Strand Gene LocusTag Fraction Ox4 remove 1,875,830 - ECD_01818 0.20 -0.1 1,876,449 - -1.1 1,876,453 - -0.3 1,876,654 + +0.4 1,876,655 - -1.1 1,876,657 + +1.5 1,876,784 + ECD_01820 0.15 -0.2 1,876,838 + ECD_01820 0.20 -1.3 1,876,838 + ECD_01820 0.20 -0.5 1,876,860 - ECD_01820 0.22 +0.1
Or see this region's nucleotide sequence