Experiment: Ox4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01561 and ECD_01562 overlap by 48 nucleotides ECD_01562 and ECD_01563 are separated by 124 nucleotides ECD_01563 and ECD_01564 are separated by 134 nucleotides
ECD_01561: ECD_01561 - H(+)/Cl(-) exchange transporter, at 1,610,512 to 1,611,768
_01561
ECD_01562: ECD_01562 - putative dethiobiotin synthetase, at 1,611,721 to 1,612,416
_01562
ECD_01563: ECD_01563 - glucosamine anaerobic growth regulon transcriptional repressor; autorepressor, at 1,612,541 to 1,613,761
_01563
ECD_01564: ECD_01564 - LysR family putative transcriptional regulator, at 1,613,896 to 1,614,789
_01564
Position (kb) 1612
1613
1614 Strain fitness (log2 ratio) -1
0
1 at 1611.777 kb on - strand at 1612.085 kb on - strand, within ECD_01562 at 1612.201 kb on - strand, within ECD_01562 at 1612.305 kb on + strand, within ECD_01562 at 1612.446 kb on - strand at 1613.042 kb on - strand, within ECD_01563 at 1613.271 kb on - strand, within ECD_01563 at 1613.271 kb on - strand, within ECD_01563 at 1613.794 kb on - strand at 1614.174 kb on - strand, within ECD_01564 at 1614.340 kb on - strand, within ECD_01564
Per-strain Table
Position Strand Gene LocusTag Fraction Ox4 remove 1,611,777 - +0.8 1,612,085 - ECD_01562 0.52 +0.3 1,612,201 - ECD_01562 0.69 -0.3 1,612,305 + ECD_01562 0.84 -0.8 1,612,446 - +0.2 1,613,042 - ECD_01563 0.41 +0.5 1,613,271 - ECD_01563 0.60 +1.7 1,613,271 - ECD_01563 0.60 +0.0 1,613,794 - -0.1 1,614,174 - ECD_01564 0.31 -0.5 1,614,340 - ECD_01564 0.50 -0.2
Or see this region's nucleotide sequence