Experiment: Ox4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01315 and ECD_01316 are separated by 175 nucleotides ECD_01316 and ECD_01317 are separated by 329 nucleotides ECD_01317 and ECD_01318 are separated by 20 nucleotides
ECD_01315: ECD_01315 - p-aminobenzoyl-glutamate hydrolase, A subunit, at 1,388,423 to 1,389,733
_01315
ECD_01316: ECD_01316 - putative DNA-binding transcriptional regulator of abgABT operon, at 1,389,909 to 1,390,817
_01316
ECD_01317: ECD_01317 - DNA endonuclease, at 1,391,147 to 1,391,710
_01317
ECD_01318: ECD_01318 - diguanylate cyclase, csgD regulator, at 1,391,731 to 1,392,963
_01318
Position (kb)
1389
1390
1391 Strain fitness (log2 ratio)
-2
-1
0
1 at 1389.222 kb on - strand, within ECD_01315 at 1389.522 kb on - strand, within ECD_01315 at 1389.567 kb on - strand, within ECD_01315 at 1389.799 kb on - strand at 1389.828 kb on + strand at 1389.886 kb on - strand at 1389.998 kb on + strand at 1391.063 kb on + strand at 1391.084 kb on + strand at 1391.116 kb on + strand at 1391.127 kb on + strand at 1391.555 kb on + strand, within ECD_01317 at 1391.555 kb on + strand, within ECD_01317 at 1391.555 kb on + strand, within ECD_01317 at 1391.555 kb on + strand, within ECD_01317 at 1391.649 kb on + strand, within ECD_01317 at 1391.653 kb on + strand, within ECD_01317
Per-strain Table
Position Strand Gene LocusTag Fraction Ox4 remove 1,389,222 - ECD_01315 0.61 +0.3 1,389,522 - ECD_01315 0.84 +0.5 1,389,567 - ECD_01315 0.87 -0.5 1,389,799 - -0.3 1,389,828 + -0.4 1,389,886 - -2.7 1,389,998 + +0.0 1,391,063 + +1.4 1,391,084 + +0.4 1,391,116 + +0.1 1,391,127 + -0.4 1,391,555 + ECD_01317 0.72 -0.6 1,391,555 + ECD_01317 0.72 +0.9 1,391,555 + ECD_01317 0.72 -0.4 1,391,555 + ECD_01317 0.72 -1.5 1,391,649 + ECD_01317 0.89 +1.5 1,391,653 + ECD_01317 0.90 -0.4
Or see this region's nucleotide sequence