Experiment: Ox4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01198 and ECD_01199 are separated by 0 nucleotides ECD_01199 and ECD_01200 overlap by 8 nucleotides ECD_01200 and ECD_01201 are separated by 338 nucleotides
ECD_01198: ECD_01198 - putative invasin, at 1,262,073 to 1,263,326
_01198
ECD_01199: ECD_01199 - response regulator in two-component regulatory system with NarX, at 1,263,327 to 1,263,977
_01199
ECD_01200: ECD_01200 - sensory histidine kinase in two-component regulatory system with NarL, at 1,263,970 to 1,265,766
_01200
ECD_01201: ECD_01201 - nitrate/nitrite transporter, at 1,266,105 to 1,267,496
_01201
Position (kb)
1263
1264
1265
1266 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1263.112 kb on + strand, within ECD_01198 at 1264.017 kb on + strand at 1264.106 kb on - strand at 1264.385 kb on - strand, within ECD_01200 at 1264.385 kb on - strand, within ECD_01200 at 1264.475 kb on - strand, within ECD_01200 at 1264.746 kb on - strand, within ECD_01200 at 1264.808 kb on - strand, within ECD_01200 at 1264.955 kb on - strand, within ECD_01200 at 1265.112 kb on + strand, within ECD_01200 at 1265.113 kb on - strand, within ECD_01200 at 1265.254 kb on - strand, within ECD_01200 at 1265.695 kb on - strand at 1265.716 kb on - strand at 1266.443 kb on + strand, within ECD_01201 at 1266.479 kb on + strand, within ECD_01201 at 1266.520 kb on + strand, within ECD_01201
Per-strain Table
Position Strand Gene LocusTag Fraction Ox4 remove 1,263,112 + ECD_01198 0.83 -0.1 1,264,017 + -0.4 1,264,106 - +3.5 1,264,385 - ECD_01200 0.23 +0.4 1,264,385 - ECD_01200 0.23 -0.8 1,264,475 - ECD_01200 0.28 -1.3 1,264,746 - ECD_01200 0.43 -1.4 1,264,808 - ECD_01200 0.47 -1.2 1,264,955 - ECD_01200 0.55 -1.1 1,265,112 + ECD_01200 0.64 +0.6 1,265,113 - ECD_01200 0.64 -0.8 1,265,254 - ECD_01200 0.71 -1.0 1,265,695 - -1.0 1,265,716 - +0.1 1,266,443 + ECD_01201 0.24 +0.8 1,266,479 + ECD_01201 0.27 -0.2 1,266,520 + ECD_01201 0.30 +1.0
Or see this region's nucleotide sequence