Strain Fitness in Escherichia coli BL21 around ECD_01200

Experiment: Ox4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01198 and ECD_01199 are separated by 0 nucleotidesECD_01199 and ECD_01200 overlap by 8 nucleotidesECD_01200 and ECD_01201 are separated by 338 nucleotides ECD_01198: ECD_01198 - putative invasin, at 1,262,073 to 1,263,326 _01198 ECD_01199: ECD_01199 - response regulator in two-component regulatory system with NarX, at 1,263,327 to 1,263,977 _01199 ECD_01200: ECD_01200 - sensory histidine kinase in two-component regulatory system with NarL, at 1,263,970 to 1,265,766 _01200 ECD_01201: ECD_01201 - nitrate/nitrite transporter, at 1,266,105 to 1,267,496 _01201 Position (kb) 1263 1264 1265 1266Strain fitness (log2 ratio) -1 0 1 2 3at 1263.112 kb on + strand, within ECD_01198at 1264.017 kb on + strandat 1264.106 kb on - strandat 1264.385 kb on - strand, within ECD_01200at 1264.385 kb on - strand, within ECD_01200at 1264.475 kb on - strand, within ECD_01200at 1264.746 kb on - strand, within ECD_01200at 1264.808 kb on - strand, within ECD_01200at 1264.955 kb on - strand, within ECD_01200at 1265.112 kb on + strand, within ECD_01200at 1265.113 kb on - strand, within ECD_01200at 1265.254 kb on - strand, within ECD_01200at 1265.695 kb on - strandat 1265.716 kb on - strandat 1266.443 kb on + strand, within ECD_01201at 1266.479 kb on + strand, within ECD_01201at 1266.520 kb on + strand, within ECD_01201

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Per-strain Table

Position Strand Gene LocusTag Fraction Ox4
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1,263,112 + ECD_01198 0.83 -0.1
1,264,017 + -0.4
1,264,106 - +3.5
1,264,385 - ECD_01200 0.23 +0.4
1,264,385 - ECD_01200 0.23 -0.8
1,264,475 - ECD_01200 0.28 -1.3
1,264,746 - ECD_01200 0.43 -1.4
1,264,808 - ECD_01200 0.47 -1.2
1,264,955 - ECD_01200 0.55 -1.1
1,265,112 + ECD_01200 0.64 +0.6
1,265,113 - ECD_01200 0.64 -0.8
1,265,254 - ECD_01200 0.71 -1.0
1,265,695 - -1.0
1,265,716 - +0.1
1,266,443 + ECD_01201 0.24 +0.8
1,266,479 + ECD_01201 0.27 -0.2
1,266,520 + ECD_01201 0.30 +1.0

Or see this region's nucleotide sequence