Experiment: Ox4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01167 and ECD_01168 are separated by 99 nucleotides ECD_01168 and ECD_01169 are separated by 1 nucleotides ECD_01169 and ECD_01170 are separated by 200 nucleotides ECD_01170 and ECD_01171 are separated by 177 nucleotides
ECD_01167: ECD_01167 - murein tetrapeptide carboxypeptidase; LD-carboxypeptidase A, at 1,230,314 to 1,231,228
_01167
ECD_01168: ECD_01168 - lytic murein endotransglycosylase E, at 1,231,328 to 1,231,939
_01168
ECD_01169: ECD_01169 - flagellar velocity braking protein, c-di-GMP-regulated, at 1,231,941 to 1,232,675
_01169
ECD_01170: ECD_01170 - UPF0410 family putative inner membrane protein, at 1,232,876 to 1,233,130
_01170
ECD_01171: ECD_01171 - uncharacterized protein, at 1,233,308 to 1,233,748
_01171
Position (kb) 1231
1232
1233 Strain fitness (log2 ratio) -1
0
1 at 1231.186 kb on + strand at 1231.262 kb on - strand at 1231.262 kb on - strand at 1231.263 kb on + strand at 1231.313 kb on - strand at 1231.575 kb on + strand, within ECD_01168 at 1231.763 kb on + strand, within ECD_01168 at 1231.907 kb on + strand at 1231.994 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ox4 remove 1,231,186 + -1.5 1,231,262 - -0.1 1,231,262 - -1.4 1,231,263 + +0.3 1,231,313 - -0.1 1,231,575 + ECD_01168 0.40 +0.3 1,231,763 + ECD_01168 0.71 +0.2 1,231,907 + +0.1 1,231,994 + -0.8
Or see this region's nucleotide sequence