Experiment: Ox4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01096 and ECD_01097 are separated by 294 nucleotides ECD_01097 and ECD_01098 are separated by 59 nucleotides
ECD_01096: ECD_01096 - putative DNase, at 1,159,344 to 1,160,141
_01096
ECD_01097: ECD_01097 - fused glucose-specific PTS enzymes: IIB component/IIC component, at 1,160,436 to 1,161,869
_01097
ECD_01098: ECD_01098 - ferric-rhodotorulic acid outer membrane transporter, at 1,161,929 to 1,164,118
_01098
Position (kb)
1160
1161
1162 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1159.486 kb on + strand, within ECD_01096 at 1159.486 kb on + strand, within ECD_01096 at 1159.486 kb on + strand, within ECD_01096 at 1159.573 kb on + strand, within ECD_01096 at 1159.644 kb on + strand, within ECD_01096 at 1159.691 kb on + strand, within ECD_01096 at 1160.032 kb on - strand, within ECD_01096 at 1160.441 kb on + strand at 1160.801 kb on + strand, within ECD_01097 at 1160.849 kb on + strand, within ECD_01097 at 1160.849 kb on + strand, within ECD_01097 at 1161.027 kb on + strand, within ECD_01097 at 1161.155 kb on + strand, within ECD_01097 at 1161.281 kb on + strand, within ECD_01097 at 1161.438 kb on - strand, within ECD_01097 at 1161.438 kb on - strand, within ECD_01097 at 1161.537 kb on + strand, within ECD_01097 at 1161.540 kb on + strand, within ECD_01097 at 1161.699 kb on - strand, within ECD_01097 at 1162.144 kb on - strand at 1162.405 kb on + strand, within ECD_01098 at 1162.510 kb on - strand, within ECD_01098 at 1162.584 kb on + strand, within ECD_01098 at 1162.753 kb on - strand, within ECD_01098
Per-strain Table
Position Strand Gene LocusTag Fraction Ox4 remove 1,159,486 + ECD_01096 0.18 +0.2 1,159,486 + ECD_01096 0.18 -0.7 1,159,486 + ECD_01096 0.18 +0.3 1,159,573 + ECD_01096 0.29 +1.1 1,159,644 + ECD_01096 0.38 +1.1 1,159,691 + ECD_01096 0.43 +0.3 1,160,032 - ECD_01096 0.86 +0.4 1,160,441 + +0.1 1,160,801 + ECD_01097 0.25 +2.3 1,160,849 + ECD_01097 0.29 +2.1 1,160,849 + ECD_01097 0.29 +0.9 1,161,027 + ECD_01097 0.41 +1.6 1,161,155 + ECD_01097 0.50 +0.4 1,161,281 + ECD_01097 0.59 +1.1 1,161,438 - ECD_01097 0.70 +0.8 1,161,438 - ECD_01097 0.70 +1.4 1,161,537 + ECD_01097 0.77 +1.9 1,161,540 + ECD_01097 0.77 +1.9 1,161,699 - ECD_01097 0.88 +0.9 1,162,144 - +0.5 1,162,405 + ECD_01098 0.22 -1.3 1,162,510 - ECD_01098 0.27 +0.0 1,162,584 + ECD_01098 0.30 -1.9 1,162,753 - ECD_01098 0.38 +0.8
Or see this region's nucleotide sequence