Strain Fitness in Escherichia coli BL21 around ECD_01009

Experiment: Ox4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01007 and ECD_04303 are separated by 203 nucleotidesECD_04303 and ECD_01008 overlap by 68 nucleotidesECD_01008 and ECD_01009 are separated by 257 nucleotidesECD_01009 and ECD_01010 are separated by 20 nucleotidesECD_01010 and ECD_01011 are separated by 10 nucleotides ECD_01007: ECD_01007 - NAD(P)H:quinone oxidoreductase, at 1,071,393 to 1,071,989 _01007 ECD_04303: ECD_04303 - KGG family protein, at 1,072,193 to 1,072,429 _04303 ECD_01008: ECD_01008 - KGG family protein, at 1,072,362 to 1,072,535 _01008 ECD_01009: ECD_01009 - pyrimidine permease, at 1,072,793 to 1,074,121 _01009 ECD_01010: ECD_01010 - flavin:NADH reductase, at 1,074,142 to 1,074,636 _01010 ECD_01011: ECD_01011 - putative malonic semialdehyde reductase, at 1,074,647 to 1,075,237 _01011 Position (kb) 1072 1073 1074 1075Strain fitness (log2 ratio) -1 0 1 2at 1072.010 kb on - strandat 1072.170 kb on + strandat 1072.324 kb on + strand, within ECD_04303at 1072.340 kb on + strand, within ECD_04303at 1072.341 kb on - strand, within ECD_04303at 1072.628 kb on + strandat 1072.745 kb on + strandat 1072.745 kb on + strandat 1072.964 kb on - strand, within ECD_01009at 1073.164 kb on - strand, within ECD_01009at 1073.202 kb on + strand, within ECD_01009at 1073.202 kb on + strand, within ECD_01009at 1073.203 kb on - strand, within ECD_01009at 1073.203 kb on - strand, within ECD_01009at 1073.203 kb on - strand, within ECD_01009at 1073.280 kb on + strand, within ECD_01009at 1073.280 kb on + strand, within ECD_01009at 1073.281 kb on - strand, within ECD_01009at 1073.281 kb on - strand, within ECD_01009at 1073.331 kb on - strand, within ECD_01009at 1073.472 kb on - strand, within ECD_01009at 1073.575 kb on + strand, within ECD_01009at 1073.605 kb on + strand, within ECD_01009at 1073.755 kb on - strand, within ECD_01009at 1073.933 kb on + strand, within ECD_01009at 1073.975 kb on + strand, within ECD_01009at 1074.143 kb on + strandat 1074.649 kb on - strandat 1074.727 kb on + strand, within ECD_01011

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Per-strain Table

Position Strand Gene LocusTag Fraction Ox4
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1,072,010 - -0.3
1,072,170 + -1.1
1,072,324 + ECD_04303 0.55 -1.0
1,072,340 + ECD_04303 0.62 +0.6
1,072,341 - ECD_04303 0.62 -1.3
1,072,628 + +0.3
1,072,745 + +0.5
1,072,745 + +0.1
1,072,964 - ECD_01009 0.13 +0.6
1,073,164 - ECD_01009 0.28 -0.9
1,073,202 + ECD_01009 0.31 +0.8
1,073,202 + ECD_01009 0.31 -0.4
1,073,203 - ECD_01009 0.31 +0.7
1,073,203 - ECD_01009 0.31 +2.0
1,073,203 - ECD_01009 0.31 +0.7
1,073,280 + ECD_01009 0.37 +0.3
1,073,280 + ECD_01009 0.37 +0.4
1,073,281 - ECD_01009 0.37 +1.6
1,073,281 - ECD_01009 0.37 -0.4
1,073,331 - ECD_01009 0.40 +0.7
1,073,472 - ECD_01009 0.51 -1.2
1,073,575 + ECD_01009 0.59 -1.4
1,073,605 + ECD_01009 0.61 +0.2
1,073,755 - ECD_01009 0.72 +0.8
1,073,933 + ECD_01009 0.86 -1.0
1,073,975 + ECD_01009 0.89 +0.7
1,074,143 + -0.7
1,074,649 - -0.3
1,074,727 + ECD_01011 0.14 -0.2

Or see this region's nucleotide sequence