Experiment: Ox4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00951 and ECD_00952 are separated by 243 nucleotides ECD_00952 and ECD_00953 are separated by 11 nucleotides
ECD_00951: ECD_00951 - 6-N-hydroxylaminopurine detoxification oxidoreductase, at 1,011,580 to 1,012,689
_00951
ECD_00952: ECD_00952 - 23S rRNA m(2)G2445 and m(7)G2069 methyltransferases, SAM-dependent, at 1,012,933 to 1,015,041
_00952
ECD_00953: ECD_00953 - replication regulatory ABC-F family DNA-binding ATPase, at 1,015,053 to 1,016,960
_00953
Position (kb)
1012
1013
1014
1015
1016 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1012.013 kb on - strand, within ECD_00951 at 1012.518 kb on + strand, within ECD_00951 at 1012.526 kb on - strand, within ECD_00951 at 1012.560 kb on + strand, within ECD_00951 at 1012.711 kb on + strand at 1012.742 kb on - strand at 1012.744 kb on + strand at 1012.744 kb on + strand at 1012.744 kb on + strand at 1012.749 kb on - strand at 1012.750 kb on + strand at 1012.750 kb on + strand at 1012.893 kb on + strand at 1012.893 kb on + strand at 1013.103 kb on + strand at 1013.125 kb on - strand at 1013.141 kb on + strand at 1013.408 kb on + strand, within ECD_00952 at 1013.408 kb on + strand, within ECD_00952 at 1013.408 kb on + strand, within ECD_00952 at 1013.694 kb on + strand, within ECD_00952 at 1013.695 kb on - strand, within ECD_00952 at 1013.987 kb on + strand, within ECD_00952 at 1013.987 kb on + strand, within ECD_00952 at 1014.115 kb on + strand, within ECD_00952 at 1014.214 kb on + strand, within ECD_00952 at 1014.236 kb on - strand, within ECD_00952 at 1014.645 kb on + strand, within ECD_00952 at 1014.649 kb on + strand, within ECD_00952 at 1015.051 kb on + strand at 1015.051 kb on + strand at 1015.067 kb on + strand at 1015.707 kb on - strand, within ECD_00953 at 1015.752 kb on + strand, within ECD_00953
Per-strain Table
Position Strand Gene LocusTag Fraction Ox4 remove 1,012,013 - ECD_00951 0.39 -0.0 1,012,518 + ECD_00951 0.85 +0.4 1,012,526 - ECD_00951 0.85 +1.2 1,012,560 + ECD_00951 0.88 +1.0 1,012,711 + +0.4 1,012,742 - +0.5 1,012,744 + +0.6 1,012,744 + -0.7 1,012,744 + -0.6 1,012,749 - +0.2 1,012,750 + -0.4 1,012,750 + -3.3 1,012,893 + -0.7 1,012,893 + +0.2 1,013,103 + +0.4 1,013,125 - +1.4 1,013,141 + -1.9 1,013,408 + ECD_00952 0.23 +0.6 1,013,408 + ECD_00952 0.23 +0.6 1,013,408 + ECD_00952 0.23 -0.3 1,013,694 + ECD_00952 0.36 +0.7 1,013,695 - ECD_00952 0.36 +0.4 1,013,987 + ECD_00952 0.50 +1.2 1,013,987 + ECD_00952 0.50 +1.8 1,014,115 + ECD_00952 0.56 +0.2 1,014,214 + ECD_00952 0.61 +1.1 1,014,236 - ECD_00952 0.62 +0.9 1,014,645 + ECD_00952 0.81 +1.1 1,014,649 + ECD_00952 0.81 -0.4 1,015,051 + -0.7 1,015,051 + +1.4 1,015,067 + +0.2 1,015,707 - ECD_00953 0.34 +1.6 1,015,752 + ECD_00953 0.37 +1.3
Or see this region's nucleotide sequence