Experiment: Ox4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00817 and ECD_00818 are separated by 131 nucleotides ECD_00818 and ECD_00819 are separated by 32 nucleotides ECD_00819 and ECD_00826 are separated by 152 nucleotides ECD_00826 and ECD_00827 overlap by 62 nucleotides ECD_00827 and ECD_00828 are separated by 192 nucleotides
ECD_00817: ECD_00817 - Repressor protein, at 873,909 to 874,472
_00817
ECD_00818: ECD_00818 - hypothetical protein, at 874,604 to 874,825
_00818
ECD_00819: ECD_00819 - hypothetical protein, at 874,858 to 876,303
_00819
ECD_00826: ECD_00826 - hypothetical protein, at 876,456 to 876,644
_00826
ECD_00827: ECD_00827 - Prophage protein, at 876,583 to 876,888
_00827
ECD_00828: ECD_00828 - hypothetical protein, at 877,081 to 877,416
_00828
Position (kb) 874
875
876
877 Strain fitness (log2 ratio) -1
0
1 at 874.584 kb on + strand at 874.631 kb on - strand, within ECD_00818 at 874.649 kb on - strand, within ECD_00818 at 875.006 kb on + strand, within ECD_00819 at 875.063 kb on + strand, within ECD_00819 at 875.140 kb on + strand, within ECD_00819 at 875.141 kb on - strand, within ECD_00819 at 875.338 kb on - strand, within ECD_00819 at 875.381 kb on - strand, within ECD_00819 at 875.382 kb on + strand, within ECD_00819 at 875.476 kb on + strand, within ECD_00819 at 875.477 kb on - strand, within ECD_00819 at 875.680 kb on + strand, within ECD_00819 at 875.680 kb on + strand, within ECD_00819 at 875.680 kb on + strand, within ECD_00819 at 875.788 kb on - strand, within ECD_00819 at 875.925 kb on + strand, within ECD_00819 at 876.042 kb on + strand, within ECD_00819 at 876.043 kb on - strand, within ECD_00819 at 876.126 kb on + strand, within ECD_00819 at 876.222 kb on + strand at 876.282 kb on + strand at 876.887 kb on - strand at 876.948 kb on + strand at 877.077 kb on - strand at 877.083 kb on - strand at 877.184 kb on - strand, within ECD_00828
Per-strain Table
Position Strand Gene LocusTag Fraction Ox4 remove 874,584 + +0.3 874,631 - ECD_00818 0.12 -1.3 874,649 - ECD_00818 0.20 -0.1 875,006 + ECD_00819 0.10 -1.4 875,063 + ECD_00819 0.14 +0.5 875,140 + ECD_00819 0.20 +1.3 875,141 - ECD_00819 0.20 -0.3 875,338 - ECD_00819 0.33 +0.2 875,381 - ECD_00819 0.36 -0.5 875,382 + ECD_00819 0.36 +0.4 875,476 + ECD_00819 0.43 +0.4 875,477 - ECD_00819 0.43 +1.1 875,680 + ECD_00819 0.57 +1.7 875,680 + ECD_00819 0.57 +1.4 875,680 + ECD_00819 0.57 +0.4 875,788 - ECD_00819 0.64 +0.7 875,925 + ECD_00819 0.74 +1.4 876,042 + ECD_00819 0.82 -0.1 876,043 - ECD_00819 0.82 -0.1 876,126 + ECD_00819 0.88 +0.9 876,222 + -0.2 876,282 + +0.1 876,887 - +1.1 876,948 + +0.2 877,077 - -1.0 877,083 - +0.1 877,184 - ECD_00828 0.31 +1.2
Or see this region's nucleotide sequence