Experiment: Ox4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00459 and ECD_00460 are separated by 31 nucleotides ECD_00460 and ECD_00461 overlap by 142 nucleotides ECD_00461 and ECD_00462 are separated by 59 nucleotides
ECD_00459: ECD_00459 - tartronate semialdehyde reductase, NADH-dependent, at 505,731 to 506,609
_00459
ECD_00460: ECD_00460 - hypothetical protein, at 506,641 to 506,919
_00460
ECD_00461: ECD_00461 - putative allantoin transporter, at 506,778 to 508,232
_00461
ECD_00462: ECD_00462 - allantoinase, at 508,292 to 509,653
_00462
Position (kb) 506
507
508
509 Strain fitness (log2 ratio) -2
-1
0
1 at 505.807 kb on + strand at 505.807 kb on + strand at 506.004 kb on - strand, within ECD_00459 at 506.129 kb on + strand, within ECD_00459 at 506.165 kb on + strand, within ECD_00459 at 506.166 kb on - strand, within ECD_00459 at 506.515 kb on + strand, within ECD_00459 at 507.079 kb on + strand, within ECD_00461 at 507.265 kb on + strand, within ECD_00461 at 507.351 kb on + strand, within ECD_00461 at 507.484 kb on + strand, within ECD_00461 at 507.621 kb on - strand, within ECD_00461 at 507.656 kb on + strand, within ECD_00461 at 508.421 kb on - strand at 508.676 kb on + strand, within ECD_00462 at 508.782 kb on + strand, within ECD_00462 at 508.782 kb on + strand, within ECD_00462 at 508.923 kb on - strand, within ECD_00462 at 508.923 kb on - strand, within ECD_00462 at 508.945 kb on + strand, within ECD_00462 at 508.976 kb on + strand, within ECD_00462 at 509.077 kb on + strand, within ECD_00462 at 509.078 kb on - strand, within ECD_00462 at 509.100 kb on - strand, within ECD_00462
Per-strain Table
Position Strand Gene LocusTag Fraction Ox4 remove 505,807 + -0.8 505,807 + -0.0 506,004 - ECD_00459 0.31 -2.5 506,129 + ECD_00459 0.45 -0.7 506,165 + ECD_00459 0.49 +0.3 506,166 - ECD_00459 0.49 -0.4 506,515 + ECD_00459 0.89 +0.2 507,079 + ECD_00461 0.21 -2.1 507,265 + ECD_00461 0.33 +0.4 507,351 + ECD_00461 0.39 -0.5 507,484 + ECD_00461 0.49 +0.1 507,621 - ECD_00461 0.58 +0.6 507,656 + ECD_00461 0.60 +0.0 508,421 - +1.2 508,676 + ECD_00462 0.28 +0.7 508,782 + ECD_00462 0.36 +0.2 508,782 + ECD_00462 0.36 -1.7 508,923 - ECD_00462 0.46 -1.9 508,923 - ECD_00462 0.46 +0.1 508,945 + ECD_00462 0.48 -0.5 508,976 + ECD_00462 0.50 +0.7 509,077 + ECD_00462 0.58 -0.8 509,078 - ECD_00462 0.58 -0.5 509,100 - ECD_00462 0.59 -1.3
Or see this region's nucleotide sequence