Strain Fitness in Escherichia coli BL21 around ECD_00331

Experiment: Ox4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00330 and ECD_00331 are separated by 118 nucleotidesECD_00331 and ECD_00332 are separated by 101 nucleotides ECD_00330: ECD_00330 - bacterial alkaline phosphatase, at 366,372 to 367,787 _00330 ECD_00331: ECD_00331 - PsiF family protein, at 367,906 to 368,226 _00331 ECD_00332: ECD_00332 - diguanylate cyclase, cellulose regualtor, at 368,328 to 369,443 _00332 Position (kb) 367 368 369Strain fitness (log2 ratio) -2 -1 0 1at 367.226 kb on + strand, within ECD_00330at 367.226 kb on + strand, within ECD_00330at 367.260 kb on + strand, within ECD_00330at 367.260 kb on + strand, within ECD_00330at 367.532 kb on - strand, within ECD_00330at 367.532 kb on - strand, within ECD_00330at 367.611 kb on - strand, within ECD_00330at 367.641 kb on + strand, within ECD_00330at 367.641 kb on + strand, within ECD_00330at 367.755 kb on + strandat 367.756 kb on - strandat 367.849 kb on + strandat 367.906 kb on - strandat 367.926 kb on + strandat 367.926 kb on + strandat 367.926 kb on + strandat 367.927 kb on - strandat 368.001 kb on + strand, within ECD_00331at 368.002 kb on - strand, within ECD_00331at 368.002 kb on - strand, within ECD_00331at 368.002 kb on - strand, within ECD_00331at 368.062 kb on + strand, within ECD_00331at 368.063 kb on - strand, within ECD_00331at 368.146 kb on - strand, within ECD_00331at 368.187 kb on + strand, within ECD_00331at 368.196 kb on + strandat 368.197 kb on - strandat 368.197 kb on - strandat 368.305 kb on + strandat 368.306 kb on - strandat 368.575 kb on + strand, within ECD_00332at 368.613 kb on - strand, within ECD_00332at 368.633 kb on - strand, within ECD_00332at 368.714 kb on + strand, within ECD_00332at 368.714 kb on + strand, within ECD_00332at 368.867 kb on + strand, within ECD_00332at 368.878 kb on - strand, within ECD_00332at 368.982 kb on + strand, within ECD_00332at 368.983 kb on - strand, within ECD_00332at 368.983 kb on - strand, within ECD_00332at 369.005 kb on + strand, within ECD_00332at 369.005 kb on + strand, within ECD_00332at 369.005 kb on + strand, within ECD_00332at 369.006 kb on - strand, within ECD_00332

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Per-strain Table

Position Strand Gene LocusTag Fraction Ox4
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367,226 + ECD_00330 0.60 +0.5
367,226 + ECD_00330 0.60 +0.4
367,260 + ECD_00330 0.63 +0.3
367,260 + ECD_00330 0.63 -0.6
367,532 - ECD_00330 0.82 -0.0
367,532 - ECD_00330 0.82 -0.7
367,611 - ECD_00330 0.88 +0.6
367,641 + ECD_00330 0.90 +0.6
367,641 + ECD_00330 0.90 -0.1
367,755 + +0.2
367,756 - +0.1
367,849 + +0.5
367,906 - -1.2
367,926 + +1.2
367,926 + -0.8
367,926 + +0.4
367,927 - -0.7
368,001 + ECD_00331 0.30 -0.4
368,002 - ECD_00331 0.30 +0.2
368,002 - ECD_00331 0.30 -1.6
368,002 - ECD_00331 0.30 -0.1
368,062 + ECD_00331 0.49 +0.0
368,063 - ECD_00331 0.49 -0.2
368,146 - ECD_00331 0.75 -0.5
368,187 + ECD_00331 0.88 +0.1
368,196 + -0.2
368,197 - +0.1
368,197 - +0.4
368,305 + +0.4
368,306 - +0.1
368,575 + ECD_00332 0.22 -1.3
368,613 - ECD_00332 0.26 +0.0
368,633 - ECD_00332 0.27 +0.1
368,714 + ECD_00332 0.35 +0.7
368,714 + ECD_00332 0.35 -0.6
368,867 + ECD_00332 0.48 -2.1
368,878 - ECD_00332 0.49 -2.5
368,982 + ECD_00332 0.59 +0.2
368,983 - ECD_00332 0.59 -1.3
368,983 - ECD_00332 0.59 +0.1
369,005 + ECD_00332 0.61 -1.1
369,005 + ECD_00332 0.61 +0.5
369,005 + ECD_00332 0.61 +0.2
369,006 - ECD_00332 0.61 -0.2

Or see this region's nucleotide sequence