Experiment: Ox4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00213 and ECD_00214 are separated by 40 nucleotides ECD_00214 and ECD_00215 are separated by 153 nucleotides ECD_00215 and ECD_00216 are separated by 42 nucleotides
ECD_00213: ECD_00213 - putative transposase, at 242,816 to 243,952
_00213
ECD_00214: ECD_00214 - putative NAD(P)-binding C-N hydrolase family amidase, at 243,993 to 244,763
_00214
ECD_00215: ECD_00215 - inhibitor of c-type lysozyme, periplasmic, at 244,917 to 245,390
_00215
ECD_00216: ECD_00216 - acyl coenzyme A dehydrogenase, at 245,433 to 247,877
_00216
Position (kb) 244
245
246 Strain fitness (log2 ratio) -2
-1
0
1 at 244.005 kb on - strand at 244.005 kb on - strand at 244.116 kb on - strand, within ECD_00214 at 244.134 kb on - strand, within ECD_00214 at 244.134 kb on - strand, within ECD_00214 at 244.204 kb on + strand, within ECD_00214 at 244.282 kb on + strand, within ECD_00214 at 244.282 kb on + strand, within ECD_00214 at 244.283 kb on - strand, within ECD_00214 at 244.298 kb on - strand, within ECD_00214 at 244.298 kb on - strand, within ECD_00214 at 244.332 kb on + strand, within ECD_00214 at 244.332 kb on + strand, within ECD_00214 at 244.404 kb on - strand, within ECD_00214 at 244.406 kb on - strand, within ECD_00214 at 244.411 kb on - strand, within ECD_00214 at 244.411 kb on - strand, within ECD_00214 at 244.422 kb on + strand, within ECD_00214 at 244.423 kb on - strand, within ECD_00214 at 244.446 kb on - strand, within ECD_00214 at 244.459 kb on - strand, within ECD_00214 at 244.516 kb on - strand, within ECD_00214 at 244.516 kb on - strand, within ECD_00214 at 244.559 kb on + strand, within ECD_00214 at 244.560 kb on - strand, within ECD_00214 at 244.560 kb on - strand, within ECD_00214 at 244.578 kb on + strand, within ECD_00214 at 244.578 kb on + strand, within ECD_00214 at 244.578 kb on + strand, within ECD_00214 at 244.670 kb on + strand, within ECD_00214 at 244.670 kb on + strand, within ECD_00214 at 244.671 kb on - strand, within ECD_00214 at 244.671 kb on - strand, within ECD_00214 at 244.746 kb on - strand at 244.768 kb on + strand at 244.768 kb on + strand at 244.769 kb on - strand at 244.769 kb on - strand at 244.793 kb on + strand at 244.794 kb on - strand at 244.856 kb on + strand at 244.903 kb on - strand at 244.913 kb on + strand at 245.011 kb on + strand, within ECD_00215 at 245.068 kb on + strand, within ECD_00215 at 245.068 kb on + strand, within ECD_00215 at 245.068 kb on + strand, within ECD_00215 at 245.069 kb on - strand, within ECD_00215 at 245.079 kb on - strand, within ECD_00215 at 245.112 kb on + strand, within ECD_00215 at 245.112 kb on + strand, within ECD_00215 at 245.112 kb on + strand, within ECD_00215 at 245.112 kb on + strand, within ECD_00215 at 245.112 kb on + strand, within ECD_00215 at 245.112 kb on + strand, within ECD_00215 at 245.113 kb on - strand, within ECD_00215 at 245.113 kb on - strand, within ECD_00215 at 245.113 kb on - strand, within ECD_00215 at 245.113 kb on - strand, within ECD_00215 at 245.113 kb on - strand, within ECD_00215 at 245.151 kb on + strand, within ECD_00215 at 245.151 kb on + strand, within ECD_00215 at 245.198 kb on + strand, within ECD_00215 at 245.199 kb on - strand, within ECD_00215 at 245.426 kb on + strand at 245.434 kb on + strand at 245.637 kb on - strand at 245.648 kb on + strand at 245.801 kb on + strand, within ECD_00216 at 245.929 kb on + strand, within ECD_00216 at 245.943 kb on + strand, within ECD_00216 at 246.151 kb on + strand, within ECD_00216 at 246.152 kb on - strand, within ECD_00216 at 246.252 kb on - strand, within ECD_00216
Per-strain Table
Position Strand Gene LocusTag Fraction Ox4 remove 244,005 - +0.2 244,005 - -1.0 244,116 - ECD_00214 0.16 +0.8 244,134 - ECD_00214 0.18 -0.9 244,134 - ECD_00214 0.18 +0.7 244,204 + ECD_00214 0.27 +0.8 244,282 + ECD_00214 0.37 +0.0 244,282 + ECD_00214 0.37 +0.9 244,283 - ECD_00214 0.38 +0.7 244,298 - ECD_00214 0.40 +0.1 244,298 - ECD_00214 0.40 -0.4 244,332 + ECD_00214 0.44 +0.3 244,332 + ECD_00214 0.44 +0.7 244,404 - ECD_00214 0.53 -2.0 244,406 - ECD_00214 0.54 -1.0 244,411 - ECD_00214 0.54 +0.1 244,411 - ECD_00214 0.54 +0.3 244,422 + ECD_00214 0.56 -0.2 244,423 - ECD_00214 0.56 -0.1 244,446 - ECD_00214 0.59 -0.0 244,459 - ECD_00214 0.60 -1.6 244,516 - ECD_00214 0.68 +0.5 244,516 - ECD_00214 0.68 -0.9 244,559 + ECD_00214 0.73 -0.1 244,560 - ECD_00214 0.74 -0.5 244,560 - ECD_00214 0.74 -1.9 244,578 + ECD_00214 0.76 -0.4 244,578 + ECD_00214 0.76 +0.2 244,578 + ECD_00214 0.76 -0.1 244,670 + ECD_00214 0.88 +0.9 244,670 + ECD_00214 0.88 -0.2 244,671 - ECD_00214 0.88 -0.1 244,671 - ECD_00214 0.88 +0.7 244,746 - +0.1 244,768 + +1.3 244,768 + -0.0 244,769 - +0.4 244,769 - +0.5 244,793 + -0.3 244,794 - -0.7 244,856 + +0.4 244,903 - +0.8 244,913 + -0.1 245,011 + ECD_00215 0.20 +0.5 245,068 + ECD_00215 0.32 -0.2 245,068 + ECD_00215 0.32 -1.8 245,068 + ECD_00215 0.32 -0.1 245,069 - ECD_00215 0.32 -0.1 245,079 - ECD_00215 0.34 -0.0 245,112 + ECD_00215 0.41 +1.0 245,112 + ECD_00215 0.41 -2.3 245,112 + ECD_00215 0.41 -0.1 245,112 + ECD_00215 0.41 -1.3 245,112 + ECD_00215 0.41 +0.0 245,112 + ECD_00215 0.41 +0.2 245,113 - ECD_00215 0.41 +0.2 245,113 - ECD_00215 0.41 +0.0 245,113 - ECD_00215 0.41 +0.7 245,113 - ECD_00215 0.41 +0.5 245,113 - ECD_00215 0.41 -0.9 245,151 + ECD_00215 0.49 -1.0 245,151 + ECD_00215 0.49 -0.8 245,198 + ECD_00215 0.59 -0.6 245,199 - ECD_00215 0.59 -0.1 245,426 + +0.2 245,434 + -0.1 245,637 - -2.4 245,648 + +1.1 245,801 + ECD_00216 0.15 +0.3 245,929 + ECD_00216 0.20 +0.3 245,943 + ECD_00216 0.21 -1.3 246,151 + ECD_00216 0.29 -0.2 246,152 - ECD_00216 0.29 +1.1 246,252 - ECD_00216 0.33 -1.0
Or see this region's nucleotide sequence