Experiment: Ox4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00126 and ECD_00127 overlap by 4 nucleotides ECD_00127 and ECD_00128 are separated by 104 nucleotides ECD_00128 and ECD_00129 are separated by 63 nucleotides
ECD_00126: ECD_00126 - putative ABC transporter ATPase, at 145,583 to 146,509
_00126
ECD_00127: ECD_00127 - putative ABC transporter permease, at 146,506 to 147,276
_00127
ECD_00128: ECD_00128 - putative PTS Enzyme IIA, at 147,381 to 147,821
_00128
ECD_00129: ECD_00129 - putative polysaccharide deacetylase lipoprotein, at 147,885 to 149,114
_00129
Position (kb) 147
148 Strain fitness (log2 ratio) -2
-1
0
1 at 146.395 kb on - strand, within ECD_00126 at 146.398 kb on + strand, within ECD_00126 at 146.407 kb on - strand, within ECD_00126 at 146.427 kb on + strand at 146.430 kb on + strand at 146.430 kb on + strand at 146.431 kb on - strand at 146.434 kb on + strand at 146.571 kb on + strand at 146.625 kb on + strand, within ECD_00127 at 146.652 kb on + strand, within ECD_00127 at 146.677 kb on + strand, within ECD_00127 at 146.677 kb on + strand, within ECD_00127 at 146.678 kb on - strand, within ECD_00127 at 146.678 kb on - strand, within ECD_00127 at 146.679 kb on + strand, within ECD_00127 at 146.732 kb on - strand, within ECD_00127 at 146.775 kb on + strand, within ECD_00127 at 146.776 kb on - strand, within ECD_00127 at 146.776 kb on - strand, within ECD_00127 at 146.779 kb on - strand, within ECD_00127 at 147.053 kb on - strand, within ECD_00127 at 147.131 kb on - strand, within ECD_00127 at 147.133 kb on - strand, within ECD_00127 at 147.133 kb on - strand, within ECD_00127 at 147.133 kb on - strand, within ECD_00127 at 147.213 kb on + strand at 147.274 kb on + strand at 147.274 kb on + strand at 147.275 kb on - strand at 147.280 kb on + strand at 147.351 kb on + strand at 147.351 kb on + strand at 147.352 kb on - strand at 147.398 kb on + strand at 147.399 kb on - strand at 147.399 kb on - strand at 147.503 kb on + strand, within ECD_00128 at 147.504 kb on - strand, within ECD_00128 at 147.506 kb on + strand, within ECD_00128 at 147.506 kb on + strand, within ECD_00128 at 147.507 kb on - strand, within ECD_00128 at 147.580 kb on + strand, within ECD_00128 at 147.581 kb on - strand, within ECD_00128 at 147.613 kb on + strand, within ECD_00128 at 147.617 kb on - strand, within ECD_00128 at 147.725 kb on + strand, within ECD_00128 at 147.725 kb on + strand, within ECD_00128 at 147.726 kb on - strand, within ECD_00128 at 147.756 kb on - strand, within ECD_00128 at 147.853 kb on - strand at 147.958 kb on - strand at 148.199 kb on - strand, within ECD_00129 at 148.202 kb on + strand, within ECD_00129 at 148.225 kb on - strand, within ECD_00129 at 148.356 kb on + strand, within ECD_00129 at 148.357 kb on - strand, within ECD_00129 at 148.357 kb on - strand, within ECD_00129 at 148.357 kb on - strand, within ECD_00129 at 148.408 kb on - strand, within ECD_00129 at 148.408 kb on - strand, within ECD_00129 at 148.408 kb on - strand, within ECD_00129 at 148.415 kb on + strand, within ECD_00129 at 148.548 kb on + strand, within ECD_00129 at 148.559 kb on + strand, within ECD_00129 at 148.560 kb on - strand, within ECD_00129 at 148.592 kb on + strand, within ECD_00129 at 148.592 kb on + strand, within ECD_00129 at 148.626 kb on + strand, within ECD_00129
Per-strain Table
Position Strand Gene LocusTag Fraction Ox4 remove 146,395 - ECD_00126 0.88 -0.8 146,398 + ECD_00126 0.88 -0.1 146,407 - ECD_00126 0.89 +1.6 146,427 + +0.2 146,430 + +0.3 146,430 + -0.6 146,431 - -0.6 146,434 + -0.3 146,571 + +0.4 146,625 + ECD_00127 0.15 -0.4 146,652 + ECD_00127 0.19 +0.4 146,677 + ECD_00127 0.22 -0.6 146,677 + ECD_00127 0.22 -0.1 146,678 - ECD_00127 0.22 +0.0 146,678 - ECD_00127 0.22 +0.1 146,679 + ECD_00127 0.22 +0.1 146,732 - ECD_00127 0.29 -0.1 146,775 + ECD_00127 0.35 -0.3 146,776 - ECD_00127 0.35 -1.3 146,776 - ECD_00127 0.35 +0.6 146,779 - ECD_00127 0.35 -2.4 147,053 - ECD_00127 0.71 -0.3 147,131 - ECD_00127 0.81 +0.5 147,133 - ECD_00127 0.81 +0.2 147,133 - ECD_00127 0.81 -1.0 147,133 - ECD_00127 0.81 +0.5 147,213 + +0.5 147,274 + +0.3 147,274 + -0.6 147,275 - +0.5 147,280 + +1.1 147,351 + +0.5 147,351 + +1.0 147,352 - +1.2 147,398 + -0.3 147,399 - +1.0 147,399 - -0.3 147,503 + ECD_00128 0.28 +1.0 147,504 - ECD_00128 0.28 -0.3 147,506 + ECD_00128 0.28 +0.0 147,506 + ECD_00128 0.28 +0.8 147,507 - ECD_00128 0.29 -0.8 147,580 + ECD_00128 0.45 +0.6 147,581 - ECD_00128 0.45 -2.0 147,613 + ECD_00128 0.53 -1.0 147,617 - ECD_00128 0.54 -0.9 147,725 + ECD_00128 0.78 +0.2 147,725 + ECD_00128 0.78 -0.6 147,726 - ECD_00128 0.78 +0.2 147,756 - ECD_00128 0.85 -1.0 147,853 - +0.6 147,958 - +0.2 148,199 - ECD_00129 0.26 -0.2 148,202 + ECD_00129 0.26 +0.1 148,225 - ECD_00129 0.28 -1.1 148,356 + ECD_00129 0.38 -0.4 148,357 - ECD_00129 0.38 -0.8 148,357 - ECD_00129 0.38 -0.4 148,357 - ECD_00129 0.38 +0.6 148,408 - ECD_00129 0.43 -0.8 148,408 - ECD_00129 0.43 -1.7 148,408 - ECD_00129 0.43 -2.0 148,415 + ECD_00129 0.43 +0.1 148,548 + ECD_00129 0.54 +0.2 148,559 + ECD_00129 0.55 -0.1 148,560 - ECD_00129 0.55 +0.0 148,592 + ECD_00129 0.57 +0.1 148,592 + ECD_00129 0.57 +0.2 148,626 + ECD_00129 0.60 +0.1
Or see this region's nucleotide sequence