Strain Fitness in Escherichia coli BL21 around ECD_00125

Experiment: Ox4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00123 and ECD_00124 are separated by 205 nucleotidesECD_00124 and ECD_00125 are separated by 40 nucleotidesECD_00125 and ECD_00126 are separated by 108 nucleotides ECD_00123: ECD_00123 - glucose dehydrogenase, at 141,639 to 144,029 _00123 ECD_00124: ECD_00124 - hypoxanthine phosphoribosyltransferase, at 144,235 to 144,771 _00124 ECD_00125: ECD_00125 - carbonic anhydrase, at 144,812 to 145,474 _00125 ECD_00126: ECD_00126 - putative ABC transporter ATPase, at 145,583 to 146,509 _00126 Position (kb) 144 145 146Strain fitness (log2 ratio) -2 -1 0 1at 143.850 kb on - strandat 143.850 kb on - strandat 143.902 kb on + strandat 143.903 kb on - strandat 143.903 kb on - strandat 143.905 kb on + strandat 143.949 kb on + strandat 143.949 kb on + strandat 143.950 kb on - strandat 143.954 kb on - strandat 143.954 kb on - strandat 144.021 kb on - strandat 144.117 kb on + strandat 144.141 kb on - strandat 144.141 kb on - strandat 144.152 kb on + strandat 144.248 kb on + strandat 144.254 kb on + strandat 144.319 kb on + strand, within ECD_00124at 144.319 kb on + strand, within ECD_00124at 144.372 kb on + strand, within ECD_00124at 144.407 kb on + strand, within ECD_00124at 144.534 kb on + strand, within ECD_00124at 144.553 kb on - strand, within ECD_00124at 144.553 kb on - strand, within ECD_00124at 144.713 kb on - strand, within ECD_00124at 144.739 kb on + strandat 144.769 kb on + strandat 144.770 kb on - strandat 145.557 kb on + strandat 145.557 kb on + strandat 145.558 kb on - strandat 145.566 kb on - strandat 145.570 kb on + strandat 145.571 kb on - strandat 145.571 kb on - strandat 145.653 kb on + strandat 145.653 kb on + strandat 145.732 kb on + strand, within ECD_00126at 145.747 kb on - strand, within ECD_00126at 145.750 kb on + strand, within ECD_00126at 145.773 kb on + strand, within ECD_00126at 145.773 kb on + strand, within ECD_00126at 145.895 kb on + strand, within ECD_00126at 145.895 kb on + strand, within ECD_00126at 145.992 kb on + strand, within ECD_00126at 145.993 kb on - strand, within ECD_00126at 146.047 kb on + strand, within ECD_00126at 146.278 kb on + strand, within ECD_00126at 146.395 kb on - strand, within ECD_00126at 146.398 kb on + strand, within ECD_00126at 146.407 kb on - strand, within ECD_00126at 146.427 kb on + strandat 146.430 kb on + strandat 146.430 kb on + strandat 146.431 kb on - strandat 146.434 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ox4
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143,850 - +0.1
143,850 - -1.0
143,902 + +0.2
143,903 - -0.2
143,903 - -0.7
143,905 + -2.6
143,949 + -1.0
143,949 + -0.3
143,950 - +0.3
143,954 - -0.9
143,954 - -1.6
144,021 - +0.5
144,117 + +0.2
144,141 - +0.1
144,141 - +0.8
144,152 + -0.1
144,248 + -2.1
144,254 + -0.4
144,319 + ECD_00124 0.16 -1.7
144,319 + ECD_00124 0.16 -0.6
144,372 + ECD_00124 0.26 -0.6
144,407 + ECD_00124 0.32 -1.4
144,534 + ECD_00124 0.56 +0.0
144,553 - ECD_00124 0.59 -1.0
144,553 - ECD_00124 0.59 +0.1
144,713 - ECD_00124 0.89 -1.7
144,739 + -1.0
144,769 + -1.8
144,770 - +0.1
145,557 + -0.6
145,557 + -0.9
145,558 - -1.3
145,566 - +0.1
145,570 + +0.7
145,571 - +0.1
145,571 - +0.8
145,653 + -0.4
145,653 + +0.1
145,732 + ECD_00126 0.16 -0.1
145,747 - ECD_00126 0.18 +0.4
145,750 + ECD_00126 0.18 +0.4
145,773 + ECD_00126 0.20 -0.2
145,773 + ECD_00126 0.20 +0.6
145,895 + ECD_00126 0.34 -0.7
145,895 + ECD_00126 0.34 -0.3
145,992 + ECD_00126 0.44 -0.9
145,993 - ECD_00126 0.44 -0.8
146,047 + ECD_00126 0.50 +0.1
146,278 + ECD_00126 0.75 -0.5
146,395 - ECD_00126 0.88 -0.8
146,398 + ECD_00126 0.88 -0.1
146,407 - ECD_00126 0.89 +1.6
146,427 + +0.2
146,430 + +0.3
146,430 + -0.6
146,431 - -0.6
146,434 + -0.3

Or see this region's nucleotide sequence