Experiment: Ox4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00123 and ECD_00124 are separated by 205 nucleotides ECD_00124 and ECD_00125 are separated by 40 nucleotides ECD_00125 and ECD_00126 are separated by 108 nucleotides
ECD_00123: ECD_00123 - glucose dehydrogenase, at 141,639 to 144,029
_00123
ECD_00124: ECD_00124 - hypoxanthine phosphoribosyltransferase, at 144,235 to 144,771
_00124
ECD_00125: ECD_00125 - carbonic anhydrase, at 144,812 to 145,474
_00125
ECD_00126: ECD_00126 - putative ABC transporter ATPase, at 145,583 to 146,509
_00126
Position (kb)
144
145
146 Strain fitness (log2 ratio)
-2
-1
0
1 at 143.850 kb on - strand at 143.850 kb on - strand at 143.902 kb on + strand at 143.903 kb on - strand at 143.903 kb on - strand at 143.905 kb on + strand at 143.949 kb on + strand at 143.949 kb on + strand at 143.950 kb on - strand at 143.954 kb on - strand at 143.954 kb on - strand at 144.021 kb on - strand at 144.117 kb on + strand at 144.141 kb on - strand at 144.141 kb on - strand at 144.152 kb on + strand at 144.248 kb on + strand at 144.254 kb on + strand at 144.319 kb on + strand, within ECD_00124 at 144.319 kb on + strand, within ECD_00124 at 144.372 kb on + strand, within ECD_00124 at 144.407 kb on + strand, within ECD_00124 at 144.534 kb on + strand, within ECD_00124 at 144.553 kb on - strand, within ECD_00124 at 144.553 kb on - strand, within ECD_00124 at 144.713 kb on - strand, within ECD_00124 at 144.739 kb on + strand at 144.769 kb on + strand at 144.770 kb on - strand at 145.557 kb on + strand at 145.557 kb on + strand at 145.558 kb on - strand at 145.566 kb on - strand at 145.570 kb on + strand at 145.571 kb on - strand at 145.571 kb on - strand at 145.653 kb on + strand at 145.653 kb on + strand at 145.732 kb on + strand, within ECD_00126 at 145.747 kb on - strand, within ECD_00126 at 145.750 kb on + strand, within ECD_00126 at 145.773 kb on + strand, within ECD_00126 at 145.773 kb on + strand, within ECD_00126 at 145.895 kb on + strand, within ECD_00126 at 145.895 kb on + strand, within ECD_00126 at 145.992 kb on + strand, within ECD_00126 at 145.993 kb on - strand, within ECD_00126 at 146.047 kb on + strand, within ECD_00126 at 146.278 kb on + strand, within ECD_00126 at 146.395 kb on - strand, within ECD_00126 at 146.398 kb on + strand, within ECD_00126 at 146.407 kb on - strand, within ECD_00126 at 146.427 kb on + strand at 146.430 kb on + strand at 146.430 kb on + strand at 146.431 kb on - strand at 146.434 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ox4 remove 143,850 - +0.1 143,850 - -1.0 143,902 + +0.2 143,903 - -0.2 143,903 - -0.7 143,905 + -2.6 143,949 + -1.0 143,949 + -0.3 143,950 - +0.3 143,954 - -0.9 143,954 - -1.6 144,021 - +0.5 144,117 + +0.2 144,141 - +0.1 144,141 - +0.8 144,152 + -0.1 144,248 + -2.1 144,254 + -0.4 144,319 + ECD_00124 0.16 -1.7 144,319 + ECD_00124 0.16 -0.6 144,372 + ECD_00124 0.26 -0.6 144,407 + ECD_00124 0.32 -1.4 144,534 + ECD_00124 0.56 +0.0 144,553 - ECD_00124 0.59 -1.0 144,553 - ECD_00124 0.59 +0.1 144,713 - ECD_00124 0.89 -1.7 144,739 + -1.0 144,769 + -1.8 144,770 - +0.1 145,557 + -0.6 145,557 + -0.9 145,558 - -1.3 145,566 - +0.1 145,570 + +0.7 145,571 - +0.1 145,571 - +0.8 145,653 + -0.4 145,653 + +0.1 145,732 + ECD_00126 0.16 -0.1 145,747 - ECD_00126 0.18 +0.4 145,750 + ECD_00126 0.18 +0.4 145,773 + ECD_00126 0.20 -0.2 145,773 + ECD_00126 0.20 +0.6 145,895 + ECD_00126 0.34 -0.7 145,895 + ECD_00126 0.34 -0.3 145,992 + ECD_00126 0.44 -0.9 145,993 - ECD_00126 0.44 -0.8 146,047 + ECD_00126 0.50 +0.1 146,278 + ECD_00126 0.75 -0.5 146,395 - ECD_00126 0.88 -0.8 146,398 + ECD_00126 0.88 -0.1 146,407 - ECD_00126 0.89 +1.6 146,427 + +0.2 146,430 + +0.3 146,430 + -0.6 146,431 - -0.6 146,434 + -0.3
Or see this region's nucleotide sequence