Experiment: Ox4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00076 and ECD_00077 are separated by 92 nucleotides ECD_00077 and ECD_00078 are separated by 659 nucleotides ECD_00078 and ECD_00079 are separated by 317 nucleotides
ECD_00076: ECD_00076 - 2-isopropylmalate synthase, at 84,763 to 86,334
_00076
ECD_00077: ECD_00077 - leu operon leader peptide, at 86,427 to 86,513
_00077
ECD_00078: ECD_00078 - global transcription factor, at 87,173 to 88,117
_00078
ECD_00079: ECD_00079 - acetolactate synthase 3 large subunit, at 88,435 to 90,159
_00079
Position (kb) 87
88
89 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 86.224 kb on - strand at 86.378 kb on - strand at 86.482 kb on - strand, within ECD_00077 at 86.482 kb on - strand, within ECD_00077 at 86.482 kb on - strand, within ECD_00077 at 86.482 kb on - strand, within ECD_00077 at 86.482 kb on - strand, within ECD_00077 at 86.482 kb on - strand, within ECD_00077 at 86.485 kb on - strand, within ECD_00077 at 86.485 kb on - strand, within ECD_00077 at 86.632 kb on + strand at 86.980 kb on + strand at 87.150 kb on + strand at 87.168 kb on + strand at 87.168 kb on + strand at 87.172 kb on + strand at 87.249 kb on + strand at 87.249 kb on + strand at 87.250 kb on - strand at 87.250 kb on - strand at 87.398 kb on - strand, within ECD_00078 at 87.459 kb on + strand, within ECD_00078 at 87.566 kb on - strand, within ECD_00078 at 87.594 kb on + strand, within ECD_00078 at 87.594 kb on + strand, within ECD_00078 at 87.595 kb on - strand, within ECD_00078 at 87.601 kb on + strand, within ECD_00078 at 87.601 kb on + strand, within ECD_00078 at 87.708 kb on + strand, within ECD_00078 at 87.763 kb on + strand, within ECD_00078 at 87.861 kb on + strand, within ECD_00078 at 87.862 kb on - strand, within ECD_00078 at 87.862 kb on - strand, within ECD_00078 at 87.909 kb on + strand, within ECD_00078 at 87.909 kb on + strand, within ECD_00078 at 87.910 kb on - strand, within ECD_00078 at 87.913 kb on + strand, within ECD_00078 at 87.913 kb on + strand, within ECD_00078 at 87.943 kb on + strand, within ECD_00078 at 87.984 kb on + strand, within ECD_00078 at 87.996 kb on + strand, within ECD_00078 at 87.997 kb on - strand, within ECD_00078 at 87.997 kb on - strand, within ECD_00078 at 88.095 kb on + strand at 88.096 kb on - strand at 88.116 kb on - strand at 88.350 kb on + strand at 88.531 kb on - strand at 88.534 kb on + strand at 88.534 kb on + strand at 88.549 kb on - strand at 88.571 kb on + strand at 88.571 kb on + strand at 88.571 kb on + strand at 88.571 kb on + strand at 88.571 kb on + strand at 88.572 kb on - strand at 88.572 kb on - strand at 88.572 kb on - strand at 88.602 kb on + strand at 88.603 kb on - strand at 88.703 kb on - strand, within ECD_00079 at 88.704 kb on + strand, within ECD_00079 at 88.704 kb on + strand, within ECD_00079 at 88.721 kb on + strand, within ECD_00079 at 88.721 kb on + strand, within ECD_00079 at 88.721 kb on + strand, within ECD_00079 at 88.721 kb on + strand, within ECD_00079 at 88.721 kb on + strand, within ECD_00079 at 88.742 kb on + strand, within ECD_00079 at 88.757 kb on + strand, within ECD_00079 at 88.763 kb on - strand, within ECD_00079 at 88.954 kb on + strand, within ECD_00079 at 88.977 kb on + strand, within ECD_00079 at 88.987 kb on + strand, within ECD_00079 at 88.987 kb on + strand, within ECD_00079 at 89.010 kb on + strand, within ECD_00079 at 89.010 kb on + strand, within ECD_00079 at 89.010 kb on + strand, within ECD_00079 at 89.022 kb on + strand, within ECD_00079 at 89.069 kb on - strand, within ECD_00079 at 89.073 kb on - strand, within ECD_00079
Per-strain Table
Position Strand Gene LocusTag Fraction Ox4 remove 86,224 - +0.6 86,378 - -0.3 86,482 - ECD_00077 0.63 +0.5 86,482 - ECD_00077 0.63 -0.2 86,482 - ECD_00077 0.63 -0.9 86,482 - ECD_00077 0.63 -0.2 86,482 - ECD_00077 0.63 +0.5 86,482 - ECD_00077 0.63 -1.4 86,485 - ECD_00077 0.67 -1.3 86,485 - ECD_00077 0.67 -0.2 86,632 + -0.5 86,980 + -0.3 87,150 + -0.6 87,168 + -0.4 87,168 + +0.6 87,172 + +0.7 87,249 + -0.9 87,249 + +0.6 87,250 - -0.9 87,250 - -1.9 87,398 - ECD_00078 0.24 -0.2 87,459 + ECD_00078 0.30 +0.0 87,566 - ECD_00078 0.42 -0.3 87,594 + ECD_00078 0.45 -2.2 87,594 + ECD_00078 0.45 +0.1 87,595 - ECD_00078 0.45 -1.5 87,601 + ECD_00078 0.45 -0.2 87,601 + ECD_00078 0.45 -0.9 87,708 + ECD_00078 0.57 -0.5 87,763 + ECD_00078 0.62 +0.6 87,861 + ECD_00078 0.73 +0.1 87,862 - ECD_00078 0.73 -0.7 87,862 - ECD_00078 0.73 +0.3 87,909 + ECD_00078 0.78 -0.4 87,909 + ECD_00078 0.78 -1.0 87,910 - ECD_00078 0.78 -0.4 87,913 + ECD_00078 0.78 +0.4 87,913 + ECD_00078 0.78 -2.0 87,943 + ECD_00078 0.81 -0.5 87,984 + ECD_00078 0.86 -2.9 87,996 + ECD_00078 0.87 +0.2 87,997 - ECD_00078 0.87 -1.9 87,997 - ECD_00078 0.87 -0.3 88,095 + -0.9 88,096 - +1.6 88,116 - +0.2 88,350 + +1.1 88,531 - -0.4 88,534 + -0.6 88,534 + -0.1 88,549 - -1.3 88,571 + +0.3 88,571 + -0.4 88,571 + +0.3 88,571 + +0.2 88,571 + -1.8 88,572 - -0.5 88,572 - -1.4 88,572 - -0.4 88,602 + +0.0 88,603 - -1.0 88,703 - ECD_00079 0.16 -0.6 88,704 + ECD_00079 0.16 -0.3 88,704 + ECD_00079 0.16 -0.8 88,721 + ECD_00079 0.17 +0.2 88,721 + ECD_00079 0.17 -0.7 88,721 + ECD_00079 0.17 -0.2 88,721 + ECD_00079 0.17 -0.2 88,721 + ECD_00079 0.17 +0.0 88,742 + ECD_00079 0.18 -0.6 88,757 + ECD_00079 0.19 -0.5 88,763 - ECD_00079 0.19 +0.7 88,954 + ECD_00079 0.30 -0.2 88,977 + ECD_00079 0.31 -0.3 88,987 + ECD_00079 0.32 +0.9 88,987 + ECD_00079 0.32 +0.6 89,010 + ECD_00079 0.33 +0.5 89,010 + ECD_00079 0.33 -0.2 89,010 + ECD_00079 0.33 -0.3 89,022 + ECD_00079 0.34 -0.0 89,069 - ECD_00079 0.37 +0.4 89,073 - ECD_00079 0.37 -0.7
Or see this region's nucleotide sequence