Strain Fitness in Escherichia coli BL21 around ECD_04088

Experiment: Ox4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04086 and ECD_04087 overlap by 11 nucleotidesECD_04087 and ECD_04088 are separated by 324 nucleotidesECD_04088 and ECD_04089 are separated by 61 nucleotides ECD_04086: ECD_04086 - 3'(2'),5'-bisphosphate nucleotidase, at 4,350,114 to 4,350,854 _04086 ECD_04087: ECD_04087 - putative transcriptional regulator, at 4,350,844 to 4,351,401 _04087 ECD_04088: ECD_04088 - DUF1107 family protein, at 4,351,726 to 4,351,932 _04088 ECD_04089: ECD_04089 - UPF0053 family inner membrane protein, at 4,351,994 to 4,353,337 _04089 Position (kb) 4351 4352Strain fitness (log2 ratio) -2 -1 0 1 2at 4351.015 kb on - strand, within ECD_04087at 4351.032 kb on - strand, within ECD_04087at 4351.041 kb on + strand, within ECD_04087at 4351.042 kb on - strand, within ECD_04087at 4351.042 kb on - strand, within ECD_04087at 4351.045 kb on - strand, within ECD_04087at 4351.203 kb on + strand, within ECD_04087at 4351.203 kb on + strand, within ECD_04087at 4351.204 kb on - strand, within ECD_04087at 4351.204 kb on - strand, within ECD_04087at 4351.204 kb on - strand, within ECD_04087at 4351.214 kb on - strand, within ECD_04087at 4351.232 kb on - strand, within ECD_04087at 4351.260 kb on + strand, within ECD_04087at 4351.272 kb on + strand, within ECD_04087at 4351.300 kb on - strand, within ECD_04087at 4351.415 kb on + strandat 4351.416 kb on - strandat 4351.416 kb on - strandat 4351.421 kb on - strandat 4351.460 kb on + strandat 4351.460 kb on + strandat 4351.460 kb on + strandat 4351.460 kb on + strandat 4351.460 kb on + strandat 4351.461 kb on - strandat 4351.461 kb on - strandat 4351.461 kb on - strandat 4351.461 kb on - strandat 4351.540 kb on + strandat 4351.541 kb on - strandat 4351.542 kb on + strandat 4351.543 kb on - strandat 4351.570 kb on + strandat 4351.638 kb on + strandat 4351.638 kb on + strandat 4351.638 kb on + strandat 4351.639 kb on - strandat 4351.639 kb on - strandat 4351.670 kb on + strandat 4351.673 kb on + strandat 4351.704 kb on + strandat 4351.704 kb on + strandat 4351.704 kb on + strandat 4351.704 kb on + strandat 4351.707 kb on + strandat 4351.721 kb on + strandat 4351.721 kb on + strandat 4351.722 kb on - strandat 4351.744 kb on + strandat 4351.768 kb on + strand, within ECD_04088at 4351.772 kb on + strand, within ECD_04088at 4351.796 kb on + strand, within ECD_04088at 4351.798 kb on + strand, within ECD_04088at 4351.798 kb on + strand, within ECD_04088at 4351.798 kb on + strand, within ECD_04088at 4351.798 kb on + strand, within ECD_04088at 4351.799 kb on - strand, within ECD_04088at 4351.799 kb on - strand, within ECD_04088at 4351.943 kb on - strandat 4351.952 kb on + strandat 4351.953 kb on - strandat 4352.014 kb on + strandat 4352.095 kb on - strandat 4352.095 kb on - strandat 4352.124 kb on + strandat 4352.164 kb on + strand, within ECD_04089at 4352.165 kb on - strand, within ECD_04089at 4352.165 kb on - strand, within ECD_04089at 4352.173 kb on + strand, within ECD_04089at 4352.174 kb on - strand, within ECD_04089at 4352.174 kb on - strand, within ECD_04089at 4352.183 kb on - strand, within ECD_04089at 4352.330 kb on + strand, within ECD_04089at 4352.392 kb on - strand, within ECD_04089at 4352.552 kb on - strand, within ECD_04089at 4352.552 kb on - strand, within ECD_04089at 4352.581 kb on + strand, within ECD_04089at 4352.582 kb on - strand, within ECD_04089at 4352.590 kb on + strand, within ECD_04089at 4352.591 kb on - strand, within ECD_04089at 4352.605 kb on + strand, within ECD_04089at 4352.605 kb on + strand, within ECD_04089at 4352.629 kb on + strand, within ECD_04089at 4352.630 kb on - strand, within ECD_04089at 4352.630 kb on - strand, within ECD_04089at 4352.755 kb on + strand, within ECD_04089at 4352.756 kb on - strand, within ECD_04089at 4352.756 kb on - strand, within ECD_04089at 4352.759 kb on + strand, within ECD_04089at 4352.760 kb on - strand, within ECD_04089at 4352.796 kb on + strand, within ECD_04089at 4352.796 kb on + strand, within ECD_04089at 4352.796 kb on + strand, within ECD_04089at 4352.797 kb on - strand, within ECD_04089at 4352.824 kb on + strand, within ECD_04089at 4352.825 kb on - strand, within ECD_04089at 4352.825 kb on - strand, within ECD_04089at 4352.828 kb on + strand, within ECD_04089at 4352.829 kb on - strand, within ECD_04089at 4352.829 kb on - strand, within ECD_04089at 4352.932 kb on + strand, within ECD_04089at 4352.932 kb on + strand, within ECD_04089

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Per-strain Table

Position Strand Gene LocusTag Fraction Ox4
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4,351,015 - ECD_04087 0.31 -0.1
4,351,032 - ECD_04087 0.34 -0.5
4,351,041 + ECD_04087 0.35 +0.7
4,351,042 - ECD_04087 0.35 -1.0
4,351,042 - ECD_04087 0.35 -0.7
4,351,045 - ECD_04087 0.36 -0.5
4,351,203 + ECD_04087 0.64 -1.1
4,351,203 + ECD_04087 0.64 -0.1
4,351,204 - ECD_04087 0.65 +0.1
4,351,204 - ECD_04087 0.65 +0.0
4,351,204 - ECD_04087 0.65 -1.4
4,351,214 - ECD_04087 0.66 +1.1
4,351,232 - ECD_04087 0.70 +2.0
4,351,260 + ECD_04087 0.75 +0.2
4,351,272 + ECD_04087 0.77 +0.7
4,351,300 - ECD_04087 0.82 -0.5
4,351,415 + +0.0
4,351,416 - -1.6
4,351,416 - -0.9
4,351,421 - -0.1
4,351,460 + -0.5
4,351,460 + +0.3
4,351,460 + +0.3
4,351,460 + +1.0
4,351,460 + -0.5
4,351,461 - +0.4
4,351,461 - -0.4
4,351,461 - -0.4
4,351,461 - -0.4
4,351,540 + -0.3
4,351,541 - +0.5
4,351,542 + +0.7
4,351,543 - -0.3
4,351,570 + +0.1
4,351,638 + -0.0
4,351,638 + -0.8
4,351,638 + -1.1
4,351,639 - -1.6
4,351,639 - -1.8
4,351,670 + -0.1
4,351,673 + -0.8
4,351,704 + -0.8
4,351,704 + -0.8
4,351,704 + -1.2
4,351,704 + +1.0
4,351,707 + +0.6
4,351,721 + -0.9
4,351,721 + -1.3
4,351,722 - -0.8
4,351,744 + -1.4
4,351,768 + ECD_04088 0.20 -0.6
4,351,772 + ECD_04088 0.22 -1.6
4,351,796 + ECD_04088 0.34 -1.4
4,351,798 + ECD_04088 0.35 -0.5
4,351,798 + ECD_04088 0.35 -0.8
4,351,798 + ECD_04088 0.35 -0.1
4,351,798 + ECD_04088 0.35 -1.6
4,351,799 - ECD_04088 0.35 +0.3
4,351,799 - ECD_04088 0.35 -0.1
4,351,943 - -0.5
4,351,952 + -1.1
4,351,953 - -1.1
4,352,014 + +1.5
4,352,095 - +0.0
4,352,095 - +0.2
4,352,124 + +0.4
4,352,164 + ECD_04089 0.13 +0.9
4,352,165 - ECD_04089 0.13 -0.1
4,352,165 - ECD_04089 0.13 -1.1
4,352,173 + ECD_04089 0.13 -0.3
4,352,174 - ECD_04089 0.13 -0.1
4,352,174 - ECD_04089 0.13 +0.5
4,352,183 - ECD_04089 0.14 -0.7
4,352,330 + ECD_04089 0.25 +0.4
4,352,392 - ECD_04089 0.30 +0.2
4,352,552 - ECD_04089 0.42 +0.1
4,352,552 - ECD_04089 0.42 -2.3
4,352,581 + ECD_04089 0.44 +0.3
4,352,582 - ECD_04089 0.44 -1.0
4,352,590 + ECD_04089 0.44 +0.1
4,352,591 - ECD_04089 0.44 +0.0
4,352,605 + ECD_04089 0.45 +1.0
4,352,605 + ECD_04089 0.45 -0.1
4,352,629 + ECD_04089 0.47 -0.6
4,352,630 - ECD_04089 0.47 -0.1
4,352,630 - ECD_04089 0.47 +0.4
4,352,755 + ECD_04089 0.57 +0.4
4,352,756 - ECD_04089 0.57 +1.1
4,352,756 - ECD_04089 0.57 -1.1
4,352,759 + ECD_04089 0.57 +0.2
4,352,760 - ECD_04089 0.57 -0.1
4,352,796 + ECD_04089 0.60 -1.1
4,352,796 + ECD_04089 0.60 -0.1
4,352,796 + ECD_04089 0.60 -0.3
4,352,797 - ECD_04089 0.60 +0.0
4,352,824 + ECD_04089 0.62 -0.1
4,352,825 - ECD_04089 0.62 +0.1
4,352,825 - ECD_04089 0.62 +0.5
4,352,828 + ECD_04089 0.62 -0.6
4,352,829 - ECD_04089 0.62 +0.1
4,352,829 - ECD_04089 0.62 -0.4
4,352,932 + ECD_04089 0.70 +0.1
4,352,932 + ECD_04089 0.70 -0.6

Or see this region's nucleotide sequence