Experiment: Ox4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03933 and ECD_03934 are separated by 2 nucleotides ECD_03934 and ECD_03935 are separated by 85 nucleotides ECD_03935 and ECD_03936 are separated by 545 nucleotides
ECD_03933: ECD_03933 - putative membrane-anchored cyclic-di-GMP phosphodiesterase, at 4,182,881 to 4,184,467
_03933
ECD_03934: ECD_03934 - superoxide response regulon transcriptional activator; autoregulator, at 4,184,470 to 4,184,793
_03934
ECD_03935: ECD_03935 - redox-sensitive transcriptional activator of soxS; autorepressor, at 4,184,879 to 4,185,343
_03935
ECD_03936: ECD_03936 - guanine/hypoxanthine permease, high affinity; guanine/hypoxanthine:H+ symporter, at 4,185,889 to 4,187,238
_03936
Position (kb) 4184
4185
4186 Strain fitness (log2 ratio) -1
0
1
2
3 at 4183.889 kb on + strand, within ECD_03933 at 4183.957 kb on + strand, within ECD_03933 at 4183.958 kb on - strand, within ECD_03933 at 4184.129 kb on + strand, within ECD_03933 at 4184.182 kb on + strand, within ECD_03933 at 4184.302 kb on - strand, within ECD_03933 at 4184.342 kb on - strand at 4184.370 kb on - strand at 4184.417 kb on - strand at 4184.472 kb on - strand at 4184.549 kb on + strand, within ECD_03934 at 4184.550 kb on - strand, within ECD_03934 at 4184.550 kb on - strand, within ECD_03934 at 4184.614 kb on + strand, within ECD_03934 at 4184.794 kb on - strand at 4185.130 kb on + strand, within ECD_03935 at 4185.130 kb on + strand, within ECD_03935 at 4185.131 kb on - strand, within ECD_03935 at 4185.199 kb on + strand, within ECD_03935 at 4185.200 kb on - strand, within ECD_03935 at 4185.235 kb on + strand, within ECD_03935 at 4185.235 kb on + strand, within ECD_03935 at 4185.236 kb on - strand, within ECD_03935 at 4185.236 kb on - strand, within ECD_03935 at 4185.363 kb on - strand at 4185.363 kb on - strand at 4185.393 kb on + strand at 4185.405 kb on - strand at 4185.482 kb on - strand at 4185.487 kb on + strand at 4185.750 kb on + strand at 4185.817 kb on + strand at 4185.888 kb on + strand at 4185.888 kb on + strand at 4185.889 kb on - strand at 4185.889 kb on - strand at 4186.009 kb on + strand at 4186.032 kb on + strand, within ECD_03936 at 4186.032 kb on + strand, within ECD_03936 at 4186.033 kb on - strand, within ECD_03936 at 4186.033 kb on - strand, within ECD_03936 at 4186.105 kb on - strand, within ECD_03936 at 4186.200 kb on + strand, within ECD_03936 at 4186.200 kb on + strand, within ECD_03936 at 4186.200 kb on + strand, within ECD_03936 at 4186.200 kb on + strand, within ECD_03936 at 4186.200 kb on + strand, within ECD_03936 at 4186.200 kb on + strand, within ECD_03936 at 4186.201 kb on - strand, within ECD_03936 at 4186.201 kb on - strand, within ECD_03936 at 4186.209 kb on - strand, within ECD_03936 at 4186.209 kb on - strand, within ECD_03936 at 4186.251 kb on + strand, within ECD_03936
Per-strain Table
Position Strand Gene LocusTag Fraction Ox4 remove 4,183,889 + ECD_03933 0.64 -0.6 4,183,957 + ECD_03933 0.68 -0.1 4,183,958 - ECD_03933 0.68 +0.5 4,184,129 + ECD_03933 0.79 +0.8 4,184,182 + ECD_03933 0.82 -1.7 4,184,302 - ECD_03933 0.90 -0.7 4,184,342 - +0.6 4,184,370 - -0.2 4,184,417 - +2.4 4,184,472 - +0.4 4,184,549 + ECD_03934 0.24 -0.2 4,184,550 - ECD_03934 0.25 -1.0 4,184,550 - ECD_03934 0.25 +0.2 4,184,614 + ECD_03934 0.44 -0.2 4,184,794 - -1.1 4,185,130 + ECD_03935 0.54 +0.3 4,185,130 + ECD_03935 0.54 -0.3 4,185,131 - ECD_03935 0.54 -0.8 4,185,199 + ECD_03935 0.69 +0.0 4,185,200 - ECD_03935 0.69 -1.1 4,185,235 + ECD_03935 0.77 -0.1 4,185,235 + ECD_03935 0.77 +1.4 4,185,236 - ECD_03935 0.77 -0.3 4,185,236 - ECD_03935 0.77 +0.4 4,185,363 - +0.5 4,185,363 - -0.8 4,185,393 + +0.3 4,185,405 - +0.1 4,185,482 - -0.1 4,185,487 + -0.2 4,185,750 + +0.6 4,185,817 + +0.0 4,185,888 + +0.6 4,185,888 + +0.3 4,185,889 - +0.4 4,185,889 - -0.2 4,186,009 + +1.2 4,186,032 + ECD_03936 0.11 +0.7 4,186,032 + ECD_03936 0.11 -0.1 4,186,033 - ECD_03936 0.11 +2.1 4,186,033 - ECD_03936 0.11 +0.0 4,186,105 - ECD_03936 0.16 +0.1 4,186,200 + ECD_03936 0.23 -0.6 4,186,200 + ECD_03936 0.23 +0.6 4,186,200 + ECD_03936 0.23 +3.0 4,186,200 + ECD_03936 0.23 -1.4 4,186,200 + ECD_03936 0.23 +0.1 4,186,200 + ECD_03936 0.23 +1.0 4,186,201 - ECD_03936 0.23 -0.6 4,186,201 - ECD_03936 0.23 +0.6 4,186,209 - ECD_03936 0.24 -0.4 4,186,209 - ECD_03936 0.24 -0.4 4,186,251 + ECD_03936 0.27 -0.5
Or see this region's nucleotide sequence