Strain Fitness in Escherichia coli BL21 around ECD_03918

Experiment: Ox4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03916 and ECD_03917 are separated by 115 nucleotidesECD_03917 and ECD_03918 are separated by 41 nucleotidesECD_03918 and ECD_03919 are separated by 318 nucleotidesECD_03919 and ECD_03920 overlap by 10 nucleotides ECD_03916: ECD_03916 - oxidative stress resistance protein; putative MATE family efflux pump; UV and mitomycin C inducible protein, at 4,165,114 to 4,166,493 _03916 ECD_03917: ECD_03917 - stress-induced protein, UPF0337 family, at 4,166,609 to 4,166,818 _03917 ECD_03918: ECD_03918 - transcriptional repressor, Zn(II)-binding, at 4,166,860 to 4,167,375 _03918 ECD_03919: ECD_03919 - uncharacterized protein, at 4,167,694 to 4,167,978 _03919 ECD_03920: ECD_03920 - uncharacterized protein, at 4,167,969 to 4,168,715 _03920 Position (kb) 4166 4167 4168Strain fitness (log2 ratio) -2 -1 0 1 2at 4165.937 kb on + strand, within ECD_03916at 4165.937 kb on + strand, within ECD_03916at 4165.937 kb on + strand, within ECD_03916at 4165.937 kb on + strand, within ECD_03916at 4166.011 kb on + strand, within ECD_03916at 4166.062 kb on + strand, within ECD_03916at 4166.063 kb on - strand, within ECD_03916at 4166.063 kb on - strand, within ECD_03916at 4166.063 kb on - strand, within ECD_03916at 4166.152 kb on + strand, within ECD_03916at 4166.152 kb on + strand, within ECD_03916at 4166.229 kb on + strand, within ECD_03916at 4166.229 kb on + strand, within ECD_03916at 4166.270 kb on - strand, within ECD_03916at 4166.289 kb on + strand, within ECD_03916at 4166.289 kb on + strand, within ECD_03916at 4166.291 kb on + strand, within ECD_03916at 4166.538 kb on + strandat 4166.538 kb on + strandat 4166.544 kb on + strandat 4166.544 kb on + strandat 4166.545 kb on - strandat 4166.573 kb on + strandat 4166.574 kb on - strandat 4166.574 kb on - strandat 4166.574 kb on - strandat 4166.590 kb on + strandat 4166.653 kb on + strand, within ECD_03917at 4166.653 kb on + strand, within ECD_03917at 4166.654 kb on - strand, within ECD_03917at 4166.692 kb on + strand, within ECD_03917at 4166.692 kb on + strand, within ECD_03917at 4166.693 kb on - strand, within ECD_03917at 4166.693 kb on - strand, within ECD_03917at 4166.710 kb on + strand, within ECD_03917at 4166.711 kb on - strand, within ECD_03917at 4166.807 kb on + strandat 4166.816 kb on + strandat 4166.817 kb on - strandat 4166.820 kb on + strandat 4166.821 kb on - strandat 4166.974 kb on - strand, within ECD_03918at 4167.010 kb on - strand, within ECD_03918at 4167.010 kb on - strand, within ECD_03918at 4167.010 kb on - strand, within ECD_03918at 4167.072 kb on + strand, within ECD_03918at 4167.073 kb on - strand, within ECD_03918at 4167.078 kb on + strand, within ECD_03918at 4167.078 kb on + strand, within ECD_03918at 4167.078 kb on + strand, within ECD_03918at 4167.079 kb on - strand, within ECD_03918at 4167.079 kb on - strand, within ECD_03918at 4167.079 kb on - strand, within ECD_03918at 4167.087 kb on + strand, within ECD_03918at 4167.088 kb on - strand, within ECD_03918at 4167.123 kb on - strand, within ECD_03918at 4167.242 kb on + strand, within ECD_03918at 4167.347 kb on - strandat 4167.347 kb on - strandat 4167.409 kb on + strandat 4167.506 kb on - strandat 4167.602 kb on + strandat 4167.635 kb on + strandat 4167.636 kb on - strandat 4167.654 kb on + strandat 4167.656 kb on + strandat 4168.130 kb on + strand, within ECD_03920

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Per-strain Table

Position Strand Gene LocusTag Fraction Ox4
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4,165,937 + ECD_03916 0.60 -0.6
4,165,937 + ECD_03916 0.60 -0.3
4,165,937 + ECD_03916 0.60 -0.9
4,165,937 + ECD_03916 0.60 -0.1
4,166,011 + ECD_03916 0.65 +0.8
4,166,062 + ECD_03916 0.69 +0.7
4,166,063 - ECD_03916 0.69 +0.4
4,166,063 - ECD_03916 0.69 -0.3
4,166,063 - ECD_03916 0.69 -0.1
4,166,152 + ECD_03916 0.75 -0.8
4,166,152 + ECD_03916 0.75 -1.2
4,166,229 + ECD_03916 0.81 -0.7
4,166,229 + ECD_03916 0.81 +0.7
4,166,270 - ECD_03916 0.84 +1.4
4,166,289 + ECD_03916 0.85 +0.5
4,166,289 + ECD_03916 0.85 +1.4
4,166,291 + ECD_03916 0.85 -0.3
4,166,538 + +0.1
4,166,538 + +0.1
4,166,544 + -0.1
4,166,544 + +0.0
4,166,545 - -0.8
4,166,573 + +0.2
4,166,574 - -0.2
4,166,574 - -0.4
4,166,574 - -1.1
4,166,590 + -0.2
4,166,653 + ECD_03917 0.21 +0.2
4,166,653 + ECD_03917 0.21 -1.2
4,166,654 - ECD_03917 0.21 -0.7
4,166,692 + ECD_03917 0.40 -0.5
4,166,692 + ECD_03917 0.40 -1.0
4,166,693 - ECD_03917 0.40 +0.1
4,166,693 - ECD_03917 0.40 +0.2
4,166,710 + ECD_03917 0.48 -0.8
4,166,711 - ECD_03917 0.49 +0.4
4,166,807 + +0.3
4,166,816 + +1.9
4,166,817 - +0.7
4,166,820 + -1.6
4,166,821 - -0.2
4,166,974 - ECD_03918 0.22 +1.8
4,167,010 - ECD_03918 0.29 +1.9
4,167,010 - ECD_03918 0.29 +0.7
4,167,010 - ECD_03918 0.29 +1.4
4,167,072 + ECD_03918 0.41 +2.3
4,167,073 - ECD_03918 0.41 +1.3
4,167,078 + ECD_03918 0.42 +1.3
4,167,078 + ECD_03918 0.42 +1.3
4,167,078 + ECD_03918 0.42 +1.1
4,167,079 - ECD_03918 0.42 +1.8
4,167,079 - ECD_03918 0.42 +1.0
4,167,079 - ECD_03918 0.42 +1.1
4,167,087 + ECD_03918 0.44 +0.5
4,167,088 - ECD_03918 0.44 +1.4
4,167,123 - ECD_03918 0.51 +1.1
4,167,242 + ECD_03918 0.74 +1.9
4,167,347 - +1.9
4,167,347 - +1.1
4,167,409 + +0.7
4,167,506 - +2.5
4,167,602 + -1.2
4,167,635 + -0.2
4,167,636 - +0.6
4,167,654 + -1.8
4,167,656 + -0.3
4,168,130 + ECD_03920 0.22 +0.3

Or see this region's nucleotide sequence