Experiment: Ox4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03909 and ECD_03910 are separated by 480 nucleotides ECD_03910 and ECD_03911 are separated by 222 nucleotides ECD_03911 and ECD_03912 are separated by 12 nucleotides
ECD_03909: ECD_03909 - maltose regulon periplasmic protein, at 4,156,926 to 4,157,846
_03909
ECD_03910: ECD_03910 - hypothetical protein, at 4,158,327 to 4,159,655
_03910
ECD_03911: ECD_03911 - chorismate--pyruvate lyase, at 4,159,878 to 4,160,375
_03911
ECD_03912: ECD_03912 - p-hydroxybenzoate octaprenyltransferase, at 4,160,388 to 4,161,260
_03912
Position (kb)
4158
4159
4160 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4157.466 kb on + strand, within ECD_03909 at 4157.466 kb on + strand, within ECD_03909 at 4157.466 kb on + strand, within ECD_03909 at 4157.522 kb on + strand, within ECD_03909 at 4157.522 kb on + strand, within ECD_03909 at 4157.581 kb on + strand, within ECD_03909 at 4157.590 kb on + strand, within ECD_03909 at 4157.591 kb on - strand, within ECD_03909 at 4157.715 kb on - strand, within ECD_03909 at 4157.715 kb on - strand, within ECD_03909 at 4157.717 kb on + strand, within ECD_03909 at 4157.756 kb on + strand at 4157.844 kb on + strand at 4157.943 kb on - strand at 4159.439 kb on + strand, within ECD_03910 at 4159.440 kb on - strand, within ECD_03910 at 4159.463 kb on - strand, within ECD_03910 at 4159.469 kb on + strand, within ECD_03910 at 4159.470 kb on - strand, within ECD_03910 at 4159.509 kb on + strand, within ECD_03910 at 4159.511 kb on + strand, within ECD_03910 at 4159.587 kb on - strand at 4159.635 kb on - strand at 4159.635 kb on - strand at 4159.643 kb on + strand at 4159.657 kb on + strand at 4159.733 kb on + strand at 4159.740 kb on + strand at 4159.796 kb on - strand at 4159.804 kb on + strand at 4159.814 kb on + strand at 4159.853 kb on + strand at 4159.858 kb on + strand at 4159.858 kb on + strand at 4159.859 kb on - strand at 4159.862 kb on + strand at 4159.862 kb on + strand at 4160.119 kb on + strand, within ECD_03911 at 4160.222 kb on - strand, within ECD_03911 at 4160.230 kb on - strand, within ECD_03911 at 4160.230 kb on - strand, within ECD_03911 at 4160.272 kb on + strand, within ECD_03911 at 4160.273 kb on - strand, within ECD_03911 at 4160.273 kb on - strand, within ECD_03911 at 4160.325 kb on - strand, within ECD_03911 at 4160.370 kb on + strand at 4160.370 kb on + strand at 4160.371 kb on - strand at 4160.371 kb on - strand at 4160.373 kb on + strand at 4160.374 kb on - strand at 4160.374 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ox4 remove 4,157,466 + ECD_03909 0.59 +1.1 4,157,466 + ECD_03909 0.59 +0.6 4,157,466 + ECD_03909 0.59 -0.5 4,157,522 + ECD_03909 0.65 -0.3 4,157,522 + ECD_03909 0.65 -1.1 4,157,581 + ECD_03909 0.71 -0.5 4,157,590 + ECD_03909 0.72 -0.0 4,157,591 - ECD_03909 0.72 +1.3 4,157,715 - ECD_03909 0.86 +2.7 4,157,715 - ECD_03909 0.86 -0.3 4,157,717 + ECD_03909 0.86 -0.1 4,157,756 + +0.4 4,157,844 + -0.3 4,157,943 - -0.1 4,159,439 + ECD_03910 0.84 +0.3 4,159,440 - ECD_03910 0.84 -0.9 4,159,463 - ECD_03910 0.85 -0.3 4,159,469 + ECD_03910 0.86 -0.0 4,159,470 - ECD_03910 0.86 -0.5 4,159,509 + ECD_03910 0.89 +0.7 4,159,511 + ECD_03910 0.89 -0.4 4,159,587 - -0.2 4,159,635 - +0.2 4,159,635 - -0.7 4,159,643 + +0.3 4,159,657 + -0.1 4,159,733 + -0.4 4,159,740 + +1.7 4,159,796 - -0.4 4,159,804 + -0.3 4,159,814 + -0.4 4,159,853 + +0.0 4,159,858 + +1.5 4,159,858 + -0.7 4,159,859 - +1.1 4,159,862 + +0.7 4,159,862 + -1.5 4,160,119 + ECD_03911 0.48 +0.7 4,160,222 - ECD_03911 0.69 +1.2 4,160,230 - ECD_03911 0.71 +3.4 4,160,230 - ECD_03911 0.71 +1.4 4,160,272 + ECD_03911 0.79 -0.4 4,160,273 - ECD_03911 0.79 +1.2 4,160,273 - ECD_03911 0.79 +2.1 4,160,325 - ECD_03911 0.90 -0.7 4,160,370 + -2.6 4,160,370 + -0.2 4,160,371 - +0.3 4,160,371 - +1.1 4,160,373 + -0.5 4,160,374 - +1.3 4,160,374 - +1.8
Or see this region's nucleotide sequence