Experiment: Ox4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03818 and ECD_03819 are separated by 91 nucleotides ECD_03819 and ECD_03820 are separated by 155 nucleotides
ECD_03818: ECD_03818 - essential cell division protein, at 4,030,303 to 4,031,262
_03818
ECD_03819: ECD_03819 - Anti-activator for CytR-CRP nucleoside utilization regulon, at 4,031,354 to 4,032,379
_03819
ECD_03820: ECD_03820 - Primosome factor n, at 4,032,535 to 4,034,733
_03820
Position (kb)
4031
4032
4033 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4030.472 kb on - strand, within ECD_03818 at 4030.472 kb on - strand, within ECD_03818 at 4030.711 kb on - strand, within ECD_03818 at 4030.711 kb on - strand, within ECD_03818 at 4030.777 kb on + strand, within ECD_03818 at 4031.305 kb on - strand at 4031.386 kb on + strand at 4031.386 kb on + strand at 4031.387 kb on - strand at 4031.387 kb on - strand at 4031.387 kb on - strand at 4031.387 kb on - strand at 4031.387 kb on - strand at 4031.450 kb on + strand at 4031.458 kb on + strand, within ECD_03819 at 4031.459 kb on - strand, within ECD_03819 at 4031.459 kb on - strand, within ECD_03819 at 4031.459 kb on - strand, within ECD_03819 at 4031.459 kb on - strand, within ECD_03819 at 4031.459 kb on - strand, within ECD_03819 at 4031.459 kb on - strand, within ECD_03819 at 4031.718 kb on + strand, within ECD_03819 at 4031.718 kb on + strand, within ECD_03819 at 4031.719 kb on - strand, within ECD_03819 at 4031.734 kb on + strand, within ECD_03819 at 4031.812 kb on + strand, within ECD_03819 at 4031.841 kb on + strand, within ECD_03819 at 4031.842 kb on - strand, within ECD_03819 at 4031.842 kb on - strand, within ECD_03819 at 4031.844 kb on - strand, within ECD_03819 at 4031.844 kb on - strand, within ECD_03819 at 4031.844 kb on - strand, within ECD_03819 at 4031.847 kb on + strand, within ECD_03819 at 4031.847 kb on + strand, within ECD_03819 at 4031.848 kb on - strand, within ECD_03819 at 4031.852 kb on + strand, within ECD_03819 at 4031.893 kb on + strand, within ECD_03819 at 4031.893 kb on + strand, within ECD_03819 at 4031.893 kb on + strand, within ECD_03819 at 4031.894 kb on - strand, within ECD_03819 at 4031.947 kb on + strand, within ECD_03819 at 4031.948 kb on - strand, within ECD_03819 at 4032.187 kb on + strand, within ECD_03819 at 4032.209 kb on - strand, within ECD_03819 at 4032.222 kb on + strand, within ECD_03819 at 4032.408 kb on + strand at 4032.408 kb on + strand at 4032.409 kb on - strand at 4032.409 kb on - strand at 4032.411 kb on + strand at 4032.411 kb on + strand at 4032.411 kb on + strand at 4032.411 kb on + strand at 4032.411 kb on + strand at 4032.411 kb on + strand at 4032.411 kb on + strand at 4032.412 kb on - strand at 4032.412 kb on - strand at 4032.412 kb on - strand at 4032.424 kb on - strand at 4032.424 kb on - strand at 4032.424 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ox4 remove 4,030,472 - ECD_03818 0.18 -2.3 4,030,472 - ECD_03818 0.18 -1.8 4,030,711 - ECD_03818 0.42 -1.7 4,030,711 - ECD_03818 0.42 -2.2 4,030,777 + ECD_03818 0.49 -1.3 4,031,305 - +0.2 4,031,386 + -0.2 4,031,386 + +0.1 4,031,387 - +0.4 4,031,387 - +1.0 4,031,387 - +0.6 4,031,387 - -0.0 4,031,387 - +2.5 4,031,450 + -0.2 4,031,458 + ECD_03819 0.10 +0.2 4,031,459 - ECD_03819 0.10 +0.9 4,031,459 - ECD_03819 0.10 +2.3 4,031,459 - ECD_03819 0.10 +0.6 4,031,459 - ECD_03819 0.10 +0.7 4,031,459 - ECD_03819 0.10 +1.1 4,031,459 - ECD_03819 0.10 +1.5 4,031,718 + ECD_03819 0.35 +0.0 4,031,718 + ECD_03819 0.35 +0.5 4,031,719 - ECD_03819 0.36 +0.9 4,031,734 + ECD_03819 0.37 +0.8 4,031,812 + ECD_03819 0.45 -0.3 4,031,841 + ECD_03819 0.47 +1.7 4,031,842 - ECD_03819 0.48 -0.6 4,031,842 - ECD_03819 0.48 -0.5 4,031,844 - ECD_03819 0.48 +0.1 4,031,844 - ECD_03819 0.48 +0.5 4,031,844 - ECD_03819 0.48 +0.7 4,031,847 + ECD_03819 0.48 -1.1 4,031,847 + ECD_03819 0.48 +0.4 4,031,848 - ECD_03819 0.48 +0.5 4,031,852 + ECD_03819 0.49 +0.3 4,031,893 + ECD_03819 0.53 +0.7 4,031,893 + ECD_03819 0.53 +0.5 4,031,893 + ECD_03819 0.53 +0.7 4,031,894 - ECD_03819 0.53 +1.1 4,031,947 + ECD_03819 0.58 +0.6 4,031,948 - ECD_03819 0.58 +0.9 4,032,187 + ECD_03819 0.81 +2.6 4,032,209 - ECD_03819 0.83 +0.3 4,032,222 + ECD_03819 0.85 +0.7 4,032,408 + +0.1 4,032,408 + +2.4 4,032,409 - -0.1 4,032,409 - +0.9 4,032,411 + +0.4 4,032,411 + +0.4 4,032,411 + +1.2 4,032,411 + +0.9 4,032,411 + +0.4 4,032,411 + +0.4 4,032,411 + +1.0 4,032,412 - +0.4 4,032,412 - +0.5 4,032,412 - -0.7 4,032,424 - +0.7 4,032,424 - -0.2 4,032,424 - +0.2
Or see this region's nucleotide sequence