Strain Fitness in Escherichia coli BL21 around ECD_03818

Experiment: Ox4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03816 and ECD_03817 are separated by 9 nucleotidesECD_03817 and ECD_03818 are separated by 92 nucleotidesECD_03818 and ECD_03819 are separated by 91 nucleotides ECD_03816: ECD_03816 - molecular chaperone and ATPase component of HslUV protease, at 4,028,339 to 4,029,670 _03816 ECD_03817: ECD_03817 - peptidase component of the HslUV protease, at 4,029,680 to 4,030,210 _03817 ECD_03818: ECD_03818 - essential cell division protein, at 4,030,303 to 4,031,262 _03818 ECD_03819: ECD_03819 - Anti-activator for CytR-CRP nucleoside utilization regulon, at 4,031,354 to 4,032,379 _03819 Position (kb) 4030 4031 4032Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4029.696 kb on - strandat 4029.725 kb on - strandat 4029.727 kb on - strandat 4029.850 kb on + strand, within ECD_03817at 4029.850 kb on + strand, within ECD_03817at 4029.851 kb on - strand, within ECD_03817at 4030.096 kb on - strand, within ECD_03817at 4030.136 kb on - strand, within ECD_03817at 4030.197 kb on - strandat 4030.197 kb on - strandat 4030.197 kb on - strandat 4030.197 kb on - strandat 4030.197 kb on - strandat 4030.201 kb on + strandat 4030.201 kb on + strandat 4030.202 kb on - strandat 4030.202 kb on - strandat 4030.202 kb on - strandat 4030.202 kb on - strandat 4030.202 kb on - strandat 4030.202 kb on - strandat 4030.202 kb on - strandat 4030.202 kb on - strandat 4030.202 kb on - strandat 4030.228 kb on - strandat 4030.241 kb on - strandat 4030.269 kb on - strandat 4030.278 kb on - strandat 4030.278 kb on - strandat 4030.280 kb on - strandat 4030.280 kb on - strandat 4030.280 kb on - strandat 4030.280 kb on - strandat 4030.280 kb on - strandat 4030.336 kb on - strandat 4030.336 kb on - strandat 4030.336 kb on - strandat 4030.472 kb on - strand, within ECD_03818at 4030.472 kb on - strand, within ECD_03818at 4030.711 kb on - strand, within ECD_03818at 4030.711 kb on - strand, within ECD_03818at 4030.777 kb on + strand, within ECD_03818at 4031.305 kb on - strandat 4031.386 kb on + strandat 4031.386 kb on + strandat 4031.387 kb on - strandat 4031.387 kb on - strandat 4031.387 kb on - strandat 4031.387 kb on - strandat 4031.387 kb on - strandat 4031.450 kb on + strandat 4031.458 kb on + strand, within ECD_03819at 4031.459 kb on - strand, within ECD_03819at 4031.459 kb on - strand, within ECD_03819at 4031.459 kb on - strand, within ECD_03819at 4031.459 kb on - strand, within ECD_03819at 4031.459 kb on - strand, within ECD_03819at 4031.459 kb on - strand, within ECD_03819at 4031.718 kb on + strand, within ECD_03819at 4031.718 kb on + strand, within ECD_03819at 4031.719 kb on - strand, within ECD_03819at 4031.734 kb on + strand, within ECD_03819at 4031.812 kb on + strand, within ECD_03819at 4031.841 kb on + strand, within ECD_03819at 4031.842 kb on - strand, within ECD_03819at 4031.842 kb on - strand, within ECD_03819at 4031.844 kb on - strand, within ECD_03819at 4031.844 kb on - strand, within ECD_03819at 4031.844 kb on - strand, within ECD_03819at 4031.847 kb on + strand, within ECD_03819at 4031.847 kb on + strand, within ECD_03819at 4031.848 kb on - strand, within ECD_03819at 4031.852 kb on + strand, within ECD_03819at 4031.893 kb on + strand, within ECD_03819at 4031.893 kb on + strand, within ECD_03819at 4031.893 kb on + strand, within ECD_03819at 4031.894 kb on - strand, within ECD_03819at 4031.947 kb on + strand, within ECD_03819at 4031.948 kb on - strand, within ECD_03819at 4032.187 kb on + strand, within ECD_03819at 4032.209 kb on - strand, within ECD_03819at 4032.222 kb on + strand, within ECD_03819

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Per-strain Table

Position Strand Gene LocusTag Fraction Ox4
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4,029,696 - -1.1
4,029,725 - -2.3
4,029,727 - -1.2
4,029,850 + ECD_03817 0.32 -0.4
4,029,850 + ECD_03817 0.32 -1.1
4,029,851 - ECD_03817 0.32 -1.8
4,030,096 - ECD_03817 0.78 -1.5
4,030,136 - ECD_03817 0.86 -1.1
4,030,197 - +1.2
4,030,197 - -2.7
4,030,197 - -2.2
4,030,197 - -2.2
4,030,197 - -1.6
4,030,201 + -0.7
4,030,201 + -2.8
4,030,202 - -1.2
4,030,202 - -0.1
4,030,202 - +0.2
4,030,202 - -0.6
4,030,202 - -2.0
4,030,202 - -0.7
4,030,202 - -1.5
4,030,202 - -0.7
4,030,202 - -1.4
4,030,228 - -2.0
4,030,241 - -1.3
4,030,269 - +1.0
4,030,278 - +1.2
4,030,278 - -0.6
4,030,280 - +0.7
4,030,280 - +0.1
4,030,280 - +0.1
4,030,280 - -0.2
4,030,280 - +0.7
4,030,336 - -3.7
4,030,336 - -1.7
4,030,336 - -1.4
4,030,472 - ECD_03818 0.18 -2.3
4,030,472 - ECD_03818 0.18 -1.8
4,030,711 - ECD_03818 0.42 -1.7
4,030,711 - ECD_03818 0.42 -2.2
4,030,777 + ECD_03818 0.49 -1.3
4,031,305 - +0.2
4,031,386 + -0.2
4,031,386 + +0.1
4,031,387 - +0.4
4,031,387 - +1.0
4,031,387 - +0.6
4,031,387 - -0.0
4,031,387 - +2.5
4,031,450 + -0.2
4,031,458 + ECD_03819 0.10 +0.2
4,031,459 - ECD_03819 0.10 +0.9
4,031,459 - ECD_03819 0.10 +2.3
4,031,459 - ECD_03819 0.10 +0.6
4,031,459 - ECD_03819 0.10 +0.7
4,031,459 - ECD_03819 0.10 +1.1
4,031,459 - ECD_03819 0.10 +1.5
4,031,718 + ECD_03819 0.35 +0.0
4,031,718 + ECD_03819 0.35 +0.5
4,031,719 - ECD_03819 0.36 +0.9
4,031,734 + ECD_03819 0.37 +0.8
4,031,812 + ECD_03819 0.45 -0.3
4,031,841 + ECD_03819 0.47 +1.7
4,031,842 - ECD_03819 0.48 -0.6
4,031,842 - ECD_03819 0.48 -0.5
4,031,844 - ECD_03819 0.48 +0.1
4,031,844 - ECD_03819 0.48 +0.5
4,031,844 - ECD_03819 0.48 +0.7
4,031,847 + ECD_03819 0.48 -1.1
4,031,847 + ECD_03819 0.48 +0.4
4,031,848 - ECD_03819 0.48 +0.5
4,031,852 + ECD_03819 0.49 +0.3
4,031,893 + ECD_03819 0.53 +0.7
4,031,893 + ECD_03819 0.53 +0.5
4,031,893 + ECD_03819 0.53 +0.7
4,031,894 - ECD_03819 0.53 +1.1
4,031,947 + ECD_03819 0.58 +0.6
4,031,948 - ECD_03819 0.58 +0.9
4,032,187 + ECD_03819 0.81 +2.6
4,032,209 - ECD_03819 0.83 +0.3
4,032,222 + ECD_03819 0.85 +0.7

Or see this region's nucleotide sequence