Experiment: Ox4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03816 and ECD_03817 are separated by 9 nucleotides ECD_03817 and ECD_03818 are separated by 92 nucleotides ECD_03818 and ECD_03819 are separated by 91 nucleotides
ECD_03816: ECD_03816 - molecular chaperone and ATPase component of HslUV protease, at 4,028,339 to 4,029,670
_03816
ECD_03817: ECD_03817 - peptidase component of the HslUV protease, at 4,029,680 to 4,030,210
_03817
ECD_03818: ECD_03818 - essential cell division protein, at 4,030,303 to 4,031,262
_03818
ECD_03819: ECD_03819 - Anti-activator for CytR-CRP nucleoside utilization regulon, at 4,031,354 to 4,032,379
_03819
Position (kb)
4030
4031
4032 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4029.696 kb on - strand at 4029.725 kb on - strand at 4029.727 kb on - strand at 4029.850 kb on + strand, within ECD_03817 at 4029.850 kb on + strand, within ECD_03817 at 4029.851 kb on - strand, within ECD_03817 at 4030.096 kb on - strand, within ECD_03817 at 4030.136 kb on - strand, within ECD_03817 at 4030.197 kb on - strand at 4030.197 kb on - strand at 4030.197 kb on - strand at 4030.197 kb on - strand at 4030.197 kb on - strand at 4030.201 kb on + strand at 4030.201 kb on + strand at 4030.202 kb on - strand at 4030.202 kb on - strand at 4030.202 kb on - strand at 4030.202 kb on - strand at 4030.202 kb on - strand at 4030.202 kb on - strand at 4030.202 kb on - strand at 4030.202 kb on - strand at 4030.202 kb on - strand at 4030.228 kb on - strand at 4030.241 kb on - strand at 4030.269 kb on - strand at 4030.278 kb on - strand at 4030.278 kb on - strand at 4030.280 kb on - strand at 4030.280 kb on - strand at 4030.280 kb on - strand at 4030.280 kb on - strand at 4030.280 kb on - strand at 4030.336 kb on - strand at 4030.336 kb on - strand at 4030.336 kb on - strand at 4030.472 kb on - strand, within ECD_03818 at 4030.472 kb on - strand, within ECD_03818 at 4030.711 kb on - strand, within ECD_03818 at 4030.711 kb on - strand, within ECD_03818 at 4030.777 kb on + strand, within ECD_03818 at 4031.305 kb on - strand at 4031.386 kb on + strand at 4031.386 kb on + strand at 4031.387 kb on - strand at 4031.387 kb on - strand at 4031.387 kb on - strand at 4031.387 kb on - strand at 4031.387 kb on - strand at 4031.450 kb on + strand at 4031.458 kb on + strand, within ECD_03819 at 4031.459 kb on - strand, within ECD_03819 at 4031.459 kb on - strand, within ECD_03819 at 4031.459 kb on - strand, within ECD_03819 at 4031.459 kb on - strand, within ECD_03819 at 4031.459 kb on - strand, within ECD_03819 at 4031.459 kb on - strand, within ECD_03819 at 4031.718 kb on + strand, within ECD_03819 at 4031.718 kb on + strand, within ECD_03819 at 4031.719 kb on - strand, within ECD_03819 at 4031.734 kb on + strand, within ECD_03819 at 4031.812 kb on + strand, within ECD_03819 at 4031.841 kb on + strand, within ECD_03819 at 4031.842 kb on - strand, within ECD_03819 at 4031.842 kb on - strand, within ECD_03819 at 4031.844 kb on - strand, within ECD_03819 at 4031.844 kb on - strand, within ECD_03819 at 4031.844 kb on - strand, within ECD_03819 at 4031.847 kb on + strand, within ECD_03819 at 4031.847 kb on + strand, within ECD_03819 at 4031.848 kb on - strand, within ECD_03819 at 4031.852 kb on + strand, within ECD_03819 at 4031.893 kb on + strand, within ECD_03819 at 4031.893 kb on + strand, within ECD_03819 at 4031.893 kb on + strand, within ECD_03819 at 4031.894 kb on - strand, within ECD_03819 at 4031.947 kb on + strand, within ECD_03819 at 4031.948 kb on - strand, within ECD_03819 at 4032.187 kb on + strand, within ECD_03819 at 4032.209 kb on - strand, within ECD_03819 at 4032.222 kb on + strand, within ECD_03819
Per-strain Table
Position Strand Gene LocusTag Fraction Ox4 remove 4,029,696 - -1.1 4,029,725 - -2.3 4,029,727 - -1.2 4,029,850 + ECD_03817 0.32 -0.4 4,029,850 + ECD_03817 0.32 -1.1 4,029,851 - ECD_03817 0.32 -1.8 4,030,096 - ECD_03817 0.78 -1.5 4,030,136 - ECD_03817 0.86 -1.1 4,030,197 - +1.2 4,030,197 - -2.7 4,030,197 - -2.2 4,030,197 - -2.2 4,030,197 - -1.6 4,030,201 + -0.7 4,030,201 + -2.8 4,030,202 - -1.2 4,030,202 - -0.1 4,030,202 - +0.2 4,030,202 - -0.6 4,030,202 - -2.0 4,030,202 - -0.7 4,030,202 - -1.5 4,030,202 - -0.7 4,030,202 - -1.4 4,030,228 - -2.0 4,030,241 - -1.3 4,030,269 - +1.0 4,030,278 - +1.2 4,030,278 - -0.6 4,030,280 - +0.7 4,030,280 - +0.1 4,030,280 - +0.1 4,030,280 - -0.2 4,030,280 - +0.7 4,030,336 - -3.7 4,030,336 - -1.7 4,030,336 - -1.4 4,030,472 - ECD_03818 0.18 -2.3 4,030,472 - ECD_03818 0.18 -1.8 4,030,711 - ECD_03818 0.42 -1.7 4,030,711 - ECD_03818 0.42 -2.2 4,030,777 + ECD_03818 0.49 -1.3 4,031,305 - +0.2 4,031,386 + -0.2 4,031,386 + +0.1 4,031,387 - +0.4 4,031,387 - +1.0 4,031,387 - +0.6 4,031,387 - -0.0 4,031,387 - +2.5 4,031,450 + -0.2 4,031,458 + ECD_03819 0.10 +0.2 4,031,459 - ECD_03819 0.10 +0.9 4,031,459 - ECD_03819 0.10 +2.3 4,031,459 - ECD_03819 0.10 +0.6 4,031,459 - ECD_03819 0.10 +0.7 4,031,459 - ECD_03819 0.10 +1.1 4,031,459 - ECD_03819 0.10 +1.5 4,031,718 + ECD_03819 0.35 +0.0 4,031,718 + ECD_03819 0.35 +0.5 4,031,719 - ECD_03819 0.36 +0.9 4,031,734 + ECD_03819 0.37 +0.8 4,031,812 + ECD_03819 0.45 -0.3 4,031,841 + ECD_03819 0.47 +1.7 4,031,842 - ECD_03819 0.48 -0.6 4,031,842 - ECD_03819 0.48 -0.5 4,031,844 - ECD_03819 0.48 +0.1 4,031,844 - ECD_03819 0.48 +0.5 4,031,844 - ECD_03819 0.48 +0.7 4,031,847 + ECD_03819 0.48 -1.1 4,031,847 + ECD_03819 0.48 +0.4 4,031,848 - ECD_03819 0.48 +0.5 4,031,852 + ECD_03819 0.49 +0.3 4,031,893 + ECD_03819 0.53 +0.7 4,031,893 + ECD_03819 0.53 +0.5 4,031,893 + ECD_03819 0.53 +0.7 4,031,894 - ECD_03819 0.53 +1.1 4,031,947 + ECD_03819 0.58 +0.6 4,031,948 - ECD_03819 0.58 +0.9 4,032,187 + ECD_03819 0.81 +2.6 4,032,209 - ECD_03819 0.83 +0.3 4,032,222 + ECD_03819 0.85 +0.7
Or see this region's nucleotide sequence