Strain Fitness in Escherichia coli BL21 around ECD_03624

Experiment: Ox4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03623 and ECD_03624 are separated by 616 nucleotidesECD_03624 and ECD_03625 are separated by 63 nucleotides ECD_03623: ECD_03623 - ATP synthase, membrane-bound accessory factor, at 3,810,861 to 3,811,241 _03623 ECD_03624: ECD_03624 - 16S rRNA m(7)G527 methyltransferase, SAM-dependent; glucose-inhibited cell-division protein, at 3,811,858 to 3,812,481 _03624 ECD_03625: ECD_03625 - 5-methylaminomethyl-2-thiouridine modification at tRNA U34, at 3,812,545 to 3,814,434 _03625 Position (kb) 3811 3812 3813Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3810.943 kb on - strand, within ECD_03623at 3811.075 kb on - strand, within ECD_03623at 3811.075 kb on - strand, within ECD_03623at 3811.075 kb on - strand, within ECD_03623at 3811.174 kb on - strand, within ECD_03623at 3811.366 kb on - strandat 3811.366 kb on - strandat 3811.370 kb on - strandat 3811.411 kb on + strandat 3811.502 kb on + strandat 3811.527 kb on - strandat 3811.527 kb on - strandat 3811.568 kb on - strandat 3811.610 kb on - strandat 3811.712 kb on - strandat 3811.787 kb on + strandat 3811.875 kb on + strandat 3811.943 kb on + strand, within ECD_03624at 3812.044 kb on - strand, within ECD_03624at 3812.044 kb on - strand, within ECD_03624at 3812.074 kb on + strand, within ECD_03624at 3812.074 kb on + strand, within ECD_03624at 3812.075 kb on - strand, within ECD_03624at 3812.075 kb on - strand, within ECD_03624at 3812.110 kb on + strand, within ECD_03624at 3812.111 kb on - strand, within ECD_03624at 3812.184 kb on + strand, within ECD_03624at 3812.230 kb on - strand, within ECD_03624at 3812.294 kb on + strand, within ECD_03624at 3812.294 kb on + strand, within ECD_03624at 3812.294 kb on + strand, within ECD_03624at 3812.295 kb on - strand, within ECD_03624at 3812.295 kb on - strand, within ECD_03624at 3812.330 kb on - strand, within ECD_03624at 3812.344 kb on - strand, within ECD_03624at 3812.344 kb on - strand, within ECD_03624at 3812.369 kb on + strand, within ECD_03624at 3812.370 kb on - strand, within ECD_03624at 3812.370 kb on - strand, within ECD_03624at 3812.385 kb on + strand, within ECD_03624at 3812.385 kb on + strand, within ECD_03624at 3812.386 kb on - strand, within ECD_03624at 3812.386 kb on - strand, within ECD_03624at 3812.394 kb on + strand, within ECD_03624at 3812.395 kb on - strand, within ECD_03624at 3812.403 kb on - strand, within ECD_03624at 3812.409 kb on + strand, within ECD_03624at 3812.409 kb on + strand, within ECD_03624at 3812.410 kb on - strand, within ECD_03624at 3812.410 kb on - strand, within ECD_03624at 3812.442 kb on + strandat 3812.442 kb on + strandat 3812.443 kb on - strandat 3812.461 kb on + strandat 3812.538 kb on + strandat 3812.539 kb on - strandat 3812.566 kb on - strandat 3812.625 kb on + strandat 3812.626 kb on - strandat 3812.784 kb on - strand, within ECD_03625at 3812.877 kb on - strand, within ECD_03625at 3813.019 kb on - strand, within ECD_03625at 3813.153 kb on + strand, within ECD_03625at 3813.153 kb on + strand, within ECD_03625at 3813.153 kb on + strand, within ECD_03625at 3813.153 kb on + strand, within ECD_03625at 3813.153 kb on + strand, within ECD_03625at 3813.154 kb on - strand, within ECD_03625at 3813.154 kb on - strand, within ECD_03625at 3813.154 kb on - strand, within ECD_03625at 3813.154 kb on - strand, within ECD_03625at 3813.200 kb on - strand, within ECD_03625at 3813.210 kb on - strand, within ECD_03625at 3813.352 kb on - strand, within ECD_03625at 3813.454 kb on - strand, within ECD_03625at 3813.454 kb on - strand, within ECD_03625

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Per-strain Table

Position Strand Gene LocusTag Fraction Ox4
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3,810,943 - ECD_03623 0.22 -0.0
3,811,075 - ECD_03623 0.56 -0.3
3,811,075 - ECD_03623 0.56 -2.2
3,811,075 - ECD_03623 0.56 -0.6
3,811,174 - ECD_03623 0.82 -0.5
3,811,366 - +0.3
3,811,366 - -0.4
3,811,370 - -0.6
3,811,411 + +0.4
3,811,502 + +0.4
3,811,527 - -0.7
3,811,527 - +0.7
3,811,568 - +0.7
3,811,610 - +0.2
3,811,712 - +0.1
3,811,787 + +0.1
3,811,875 + -0.0
3,811,943 + ECD_03624 0.14 -1.5
3,812,044 - ECD_03624 0.30 -1.2
3,812,044 - ECD_03624 0.30 -1.0
3,812,074 + ECD_03624 0.35 -2.0
3,812,074 + ECD_03624 0.35 -0.8
3,812,075 - ECD_03624 0.35 -1.1
3,812,075 - ECD_03624 0.35 -1.8
3,812,110 + ECD_03624 0.40 -1.5
3,812,111 - ECD_03624 0.41 -0.9
3,812,184 + ECD_03624 0.52 -1.5
3,812,230 - ECD_03624 0.60 -1.0
3,812,294 + ECD_03624 0.70 -3.0
3,812,294 + ECD_03624 0.70 -0.9
3,812,294 + ECD_03624 0.70 -2.0
3,812,295 - ECD_03624 0.70 -1.3
3,812,295 - ECD_03624 0.70 -2.3
3,812,330 - ECD_03624 0.76 +0.4
3,812,344 - ECD_03624 0.78 -0.8
3,812,344 - ECD_03624 0.78 -0.4
3,812,369 + ECD_03624 0.82 -1.3
3,812,370 - ECD_03624 0.82 -1.6
3,812,370 - ECD_03624 0.82 -0.9
3,812,385 + ECD_03624 0.84 -0.2
3,812,385 + ECD_03624 0.84 -1.8
3,812,386 - ECD_03624 0.85 -1.3
3,812,386 - ECD_03624 0.85 -0.1
3,812,394 + ECD_03624 0.86 -2.3
3,812,395 - ECD_03624 0.86 -0.3
3,812,403 - ECD_03624 0.87 -1.4
3,812,409 + ECD_03624 0.88 +1.4
3,812,409 + ECD_03624 0.88 -0.6
3,812,410 - ECD_03624 0.88 -0.1
3,812,410 - ECD_03624 0.88 -1.6
3,812,442 + -1.5
3,812,442 + -1.8
3,812,443 - -0.9
3,812,461 + -1.1
3,812,538 + -1.5
3,812,539 - -0.8
3,812,566 - +0.5
3,812,625 + +2.7
3,812,626 - +2.7
3,812,784 - ECD_03625 0.13 -0.3
3,812,877 - ECD_03625 0.18 -0.6
3,813,019 - ECD_03625 0.25 +1.2
3,813,153 + ECD_03625 0.32 +2.7
3,813,153 + ECD_03625 0.32 +1.7
3,813,153 + ECD_03625 0.32 -0.6
3,813,153 + ECD_03625 0.32 -0.4
3,813,153 + ECD_03625 0.32 +1.7
3,813,154 - ECD_03625 0.32 +1.7
3,813,154 - ECD_03625 0.32 +0.2
3,813,154 - ECD_03625 0.32 -1.4
3,813,154 - ECD_03625 0.32 -0.3
3,813,200 - ECD_03625 0.35 +0.7
3,813,210 - ECD_03625 0.35 +1.2
3,813,352 - ECD_03625 0.43 -0.1
3,813,454 - ECD_03625 0.48 +0.2
3,813,454 - ECD_03625 0.48 +1.2

Or see this region's nucleotide sequence