Experiment: Ox4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03623 and ECD_03624 are separated by 616 nucleotides ECD_03624 and ECD_03625 are separated by 63 nucleotides
ECD_03623: ECD_03623 - ATP synthase, membrane-bound accessory factor, at 3,810,861 to 3,811,241
_03623
ECD_03624: ECD_03624 - 16S rRNA m(7)G527 methyltransferase, SAM-dependent; glucose-inhibited cell-division protein, at 3,811,858 to 3,812,481
_03624
ECD_03625: ECD_03625 - 5-methylaminomethyl-2-thiouridine modification at tRNA U34, at 3,812,545 to 3,814,434
_03625
Position (kb)
3811
3812
3813 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3810.943 kb on - strand, within ECD_03623 at 3811.075 kb on - strand, within ECD_03623 at 3811.075 kb on - strand, within ECD_03623 at 3811.075 kb on - strand, within ECD_03623 at 3811.174 kb on - strand, within ECD_03623 at 3811.366 kb on - strand at 3811.366 kb on - strand at 3811.370 kb on - strand at 3811.411 kb on + strand at 3811.502 kb on + strand at 3811.527 kb on - strand at 3811.527 kb on - strand at 3811.568 kb on - strand at 3811.610 kb on - strand at 3811.712 kb on - strand at 3811.787 kb on + strand at 3811.875 kb on + strand at 3811.943 kb on + strand, within ECD_03624 at 3812.044 kb on - strand, within ECD_03624 at 3812.044 kb on - strand, within ECD_03624 at 3812.074 kb on + strand, within ECD_03624 at 3812.074 kb on + strand, within ECD_03624 at 3812.075 kb on - strand, within ECD_03624 at 3812.075 kb on - strand, within ECD_03624 at 3812.110 kb on + strand, within ECD_03624 at 3812.111 kb on - strand, within ECD_03624 at 3812.184 kb on + strand, within ECD_03624 at 3812.230 kb on - strand, within ECD_03624 at 3812.294 kb on + strand, within ECD_03624 at 3812.294 kb on + strand, within ECD_03624 at 3812.294 kb on + strand, within ECD_03624 at 3812.295 kb on - strand, within ECD_03624 at 3812.295 kb on - strand, within ECD_03624 at 3812.330 kb on - strand, within ECD_03624 at 3812.344 kb on - strand, within ECD_03624 at 3812.344 kb on - strand, within ECD_03624 at 3812.369 kb on + strand, within ECD_03624 at 3812.370 kb on - strand, within ECD_03624 at 3812.370 kb on - strand, within ECD_03624 at 3812.385 kb on + strand, within ECD_03624 at 3812.385 kb on + strand, within ECD_03624 at 3812.386 kb on - strand, within ECD_03624 at 3812.386 kb on - strand, within ECD_03624 at 3812.394 kb on + strand, within ECD_03624 at 3812.395 kb on - strand, within ECD_03624 at 3812.403 kb on - strand, within ECD_03624 at 3812.409 kb on + strand, within ECD_03624 at 3812.409 kb on + strand, within ECD_03624 at 3812.410 kb on - strand, within ECD_03624 at 3812.410 kb on - strand, within ECD_03624 at 3812.442 kb on + strand at 3812.442 kb on + strand at 3812.443 kb on - strand at 3812.461 kb on + strand at 3812.538 kb on + strand at 3812.539 kb on - strand at 3812.566 kb on - strand at 3812.625 kb on + strand at 3812.626 kb on - strand at 3812.784 kb on - strand, within ECD_03625 at 3812.877 kb on - strand, within ECD_03625 at 3813.019 kb on - strand, within ECD_03625 at 3813.153 kb on + strand, within ECD_03625 at 3813.153 kb on + strand, within ECD_03625 at 3813.153 kb on + strand, within ECD_03625 at 3813.153 kb on + strand, within ECD_03625 at 3813.153 kb on + strand, within ECD_03625 at 3813.154 kb on - strand, within ECD_03625 at 3813.154 kb on - strand, within ECD_03625 at 3813.154 kb on - strand, within ECD_03625 at 3813.154 kb on - strand, within ECD_03625 at 3813.200 kb on - strand, within ECD_03625 at 3813.210 kb on - strand, within ECD_03625 at 3813.352 kb on - strand, within ECD_03625 at 3813.454 kb on - strand, within ECD_03625 at 3813.454 kb on - strand, within ECD_03625
Per-strain Table
Position Strand Gene LocusTag Fraction Ox4 remove 3,810,943 - ECD_03623 0.22 -0.0 3,811,075 - ECD_03623 0.56 -0.3 3,811,075 - ECD_03623 0.56 -2.2 3,811,075 - ECD_03623 0.56 -0.6 3,811,174 - ECD_03623 0.82 -0.5 3,811,366 - +0.3 3,811,366 - -0.4 3,811,370 - -0.6 3,811,411 + +0.4 3,811,502 + +0.4 3,811,527 - -0.7 3,811,527 - +0.7 3,811,568 - +0.7 3,811,610 - +0.2 3,811,712 - +0.1 3,811,787 + +0.1 3,811,875 + -0.0 3,811,943 + ECD_03624 0.14 -1.5 3,812,044 - ECD_03624 0.30 -1.2 3,812,044 - ECD_03624 0.30 -1.0 3,812,074 + ECD_03624 0.35 -2.0 3,812,074 + ECD_03624 0.35 -0.8 3,812,075 - ECD_03624 0.35 -1.1 3,812,075 - ECD_03624 0.35 -1.8 3,812,110 + ECD_03624 0.40 -1.5 3,812,111 - ECD_03624 0.41 -0.9 3,812,184 + ECD_03624 0.52 -1.5 3,812,230 - ECD_03624 0.60 -1.0 3,812,294 + ECD_03624 0.70 -3.0 3,812,294 + ECD_03624 0.70 -0.9 3,812,294 + ECD_03624 0.70 -2.0 3,812,295 - ECD_03624 0.70 -1.3 3,812,295 - ECD_03624 0.70 -2.3 3,812,330 - ECD_03624 0.76 +0.4 3,812,344 - ECD_03624 0.78 -0.8 3,812,344 - ECD_03624 0.78 -0.4 3,812,369 + ECD_03624 0.82 -1.3 3,812,370 - ECD_03624 0.82 -1.6 3,812,370 - ECD_03624 0.82 -0.9 3,812,385 + ECD_03624 0.84 -0.2 3,812,385 + ECD_03624 0.84 -1.8 3,812,386 - ECD_03624 0.85 -1.3 3,812,386 - ECD_03624 0.85 -0.1 3,812,394 + ECD_03624 0.86 -2.3 3,812,395 - ECD_03624 0.86 -0.3 3,812,403 - ECD_03624 0.87 -1.4 3,812,409 + ECD_03624 0.88 +1.4 3,812,409 + ECD_03624 0.88 -0.6 3,812,410 - ECD_03624 0.88 -0.1 3,812,410 - ECD_03624 0.88 -1.6 3,812,442 + -1.5 3,812,442 + -1.8 3,812,443 - -0.9 3,812,461 + -1.1 3,812,538 + -1.5 3,812,539 - -0.8 3,812,566 - +0.5 3,812,625 + +2.7 3,812,626 - +2.7 3,812,784 - ECD_03625 0.13 -0.3 3,812,877 - ECD_03625 0.18 -0.6 3,813,019 - ECD_03625 0.25 +1.2 3,813,153 + ECD_03625 0.32 +2.7 3,813,153 + ECD_03625 0.32 +1.7 3,813,153 + ECD_03625 0.32 -0.6 3,813,153 + ECD_03625 0.32 -0.4 3,813,153 + ECD_03625 0.32 +1.7 3,813,154 - ECD_03625 0.32 +1.7 3,813,154 - ECD_03625 0.32 +0.2 3,813,154 - ECD_03625 0.32 -1.4 3,813,154 - ECD_03625 0.32 -0.3 3,813,200 - ECD_03625 0.35 +0.7 3,813,210 - ECD_03625 0.35 +1.2 3,813,352 - ECD_03625 0.43 -0.1 3,813,454 - ECD_03625 0.48 +0.2 3,813,454 - ECD_03625 0.48 +1.2
Or see this region's nucleotide sequence