Experiment: Ox4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03621 and ECD_03622 are separated by 46 nucleotides ECD_03622 and ECD_03623 are separated by 8 nucleotides ECD_03623 and ECD_03624 are separated by 616 nucleotides
ECD_03621: ECD_03621 - F0 sector of membrane-bound ATP synthase, subunit c, at 3,809,751 to 3,809,990
_03621
ECD_03622: ECD_03622 - F0 sector of membrane-bound ATP synthase, subunit a, at 3,810,037 to 3,810,852
_03622
ECD_03623: ECD_03623 - ATP synthase, membrane-bound accessory factor, at 3,810,861 to 3,811,241
_03623
ECD_03624: ECD_03624 - 16S rRNA m(7)G527 methyltransferase, SAM-dependent; glucose-inhibited cell-division protein, at 3,811,858 to 3,812,481
_03624
Position (kb)
3810
3811
3812 Strain fitness (log2 ratio)
-2
-1
0
1 at 3810.943 kb on - strand, within ECD_03623 at 3811.075 kb on - strand, within ECD_03623 at 3811.075 kb on - strand, within ECD_03623 at 3811.075 kb on - strand, within ECD_03623 at 3811.174 kb on - strand, within ECD_03623 at 3811.366 kb on - strand at 3811.366 kb on - strand at 3811.370 kb on - strand at 3811.411 kb on + strand at 3811.502 kb on + strand at 3811.527 kb on - strand at 3811.527 kb on - strand at 3811.568 kb on - strand at 3811.610 kb on - strand at 3811.712 kb on - strand at 3811.787 kb on + strand at 3811.875 kb on + strand at 3811.943 kb on + strand, within ECD_03624 at 3812.044 kb on - strand, within ECD_03624 at 3812.044 kb on - strand, within ECD_03624 at 3812.074 kb on + strand, within ECD_03624 at 3812.074 kb on + strand, within ECD_03624 at 3812.075 kb on - strand, within ECD_03624 at 3812.075 kb on - strand, within ECD_03624 at 3812.110 kb on + strand, within ECD_03624 at 3812.111 kb on - strand, within ECD_03624 at 3812.184 kb on + strand, within ECD_03624 at 3812.230 kb on - strand, within ECD_03624
Per-strain Table
Position Strand Gene LocusTag Fraction Ox4 remove 3,810,943 - ECD_03623 0.22 -0.0 3,811,075 - ECD_03623 0.56 -0.3 3,811,075 - ECD_03623 0.56 -2.2 3,811,075 - ECD_03623 0.56 -0.6 3,811,174 - ECD_03623 0.82 -0.5 3,811,366 - +0.3 3,811,366 - -0.4 3,811,370 - -0.6 3,811,411 + +0.4 3,811,502 + +0.4 3,811,527 - -0.7 3,811,527 - +0.7 3,811,568 - +0.7 3,811,610 - +0.2 3,811,712 - +0.1 3,811,787 + +0.1 3,811,875 + -0.0 3,811,943 + ECD_03624 0.14 -1.5 3,812,044 - ECD_03624 0.30 -1.2 3,812,044 - ECD_03624 0.30 -1.0 3,812,074 + ECD_03624 0.35 -2.0 3,812,074 + ECD_03624 0.35 -0.8 3,812,075 - ECD_03624 0.35 -1.1 3,812,075 - ECD_03624 0.35 -1.8 3,812,110 + ECD_03624 0.40 -1.5 3,812,111 - ECD_03624 0.41 -0.9 3,812,184 + ECD_03624 0.52 -1.5 3,812,230 - ECD_03624 0.60 -1.0
Or see this region's nucleotide sequence