Strain Fitness in Escherichia coli BL21 around ECD_03623

Experiment: Ox4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03621 and ECD_03622 are separated by 46 nucleotidesECD_03622 and ECD_03623 are separated by 8 nucleotidesECD_03623 and ECD_03624 are separated by 616 nucleotides ECD_03621: ECD_03621 - F0 sector of membrane-bound ATP synthase, subunit c, at 3,809,751 to 3,809,990 _03621 ECD_03622: ECD_03622 - F0 sector of membrane-bound ATP synthase, subunit a, at 3,810,037 to 3,810,852 _03622 ECD_03623: ECD_03623 - ATP synthase, membrane-bound accessory factor, at 3,810,861 to 3,811,241 _03623 ECD_03624: ECD_03624 - 16S rRNA m(7)G527 methyltransferase, SAM-dependent; glucose-inhibited cell-division protein, at 3,811,858 to 3,812,481 _03624 Position (kb) 3810 3811 3812Strain fitness (log2 ratio) -2 -1 0 1at 3810.943 kb on - strand, within ECD_03623at 3811.075 kb on - strand, within ECD_03623at 3811.075 kb on - strand, within ECD_03623at 3811.075 kb on - strand, within ECD_03623at 3811.174 kb on - strand, within ECD_03623at 3811.366 kb on - strandat 3811.366 kb on - strandat 3811.370 kb on - strandat 3811.411 kb on + strandat 3811.502 kb on + strandat 3811.527 kb on - strandat 3811.527 kb on - strandat 3811.568 kb on - strandat 3811.610 kb on - strandat 3811.712 kb on - strandat 3811.787 kb on + strandat 3811.875 kb on + strandat 3811.943 kb on + strand, within ECD_03624at 3812.044 kb on - strand, within ECD_03624at 3812.044 kb on - strand, within ECD_03624at 3812.074 kb on + strand, within ECD_03624at 3812.074 kb on + strand, within ECD_03624at 3812.075 kb on - strand, within ECD_03624at 3812.075 kb on - strand, within ECD_03624at 3812.110 kb on + strand, within ECD_03624at 3812.111 kb on - strand, within ECD_03624at 3812.184 kb on + strand, within ECD_03624at 3812.230 kb on - strand, within ECD_03624

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Per-strain Table

Position Strand Gene LocusTag Fraction Ox4
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3,810,943 - ECD_03623 0.22 -0.0
3,811,075 - ECD_03623 0.56 -0.3
3,811,075 - ECD_03623 0.56 -2.2
3,811,075 - ECD_03623 0.56 -0.6
3,811,174 - ECD_03623 0.82 -0.5
3,811,366 - +0.3
3,811,366 - -0.4
3,811,370 - -0.6
3,811,411 + +0.4
3,811,502 + +0.4
3,811,527 - -0.7
3,811,527 - +0.7
3,811,568 - +0.7
3,811,610 - +0.2
3,811,712 - +0.1
3,811,787 + +0.1
3,811,875 + -0.0
3,811,943 + ECD_03624 0.14 -1.5
3,812,044 - ECD_03624 0.30 -1.2
3,812,044 - ECD_03624 0.30 -1.0
3,812,074 + ECD_03624 0.35 -2.0
3,812,074 + ECD_03624 0.35 -0.8
3,812,075 - ECD_03624 0.35 -1.1
3,812,075 - ECD_03624 0.35 -1.8
3,812,110 + ECD_03624 0.40 -1.5
3,812,111 - ECD_03624 0.41 -0.9
3,812,184 + ECD_03624 0.52 -1.5
3,812,230 - ECD_03624 0.60 -1.0

Or see this region's nucleotide sequence