Strain Fitness in Escherichia coli BL21 around ECD_03477

Experiment: Ox4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03476 and ECD_03477 are separated by 9 nucleotidesECD_03477 and ECD_03478 are separated by 3 nucleotides ECD_03476: ECD_03476 - ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding, at 3,661,966 to 3,662,898 _03476 ECD_03477: ECD_03477 - ADP-heptose:LPS heptosyltransferase II, at 3,662,908 to 3,663,954 _03477 ECD_03478: ECD_03478 - ADP-heptose:LPS heptosyl transferase I, at 3,663,958 to 3,664,938 _03478 Position (kb) 3662 3663 3664Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3661.911 kb on + strandat 3661.911 kb on + strandat 3661.917 kb on + strandat 3661.917 kb on + strandat 3661.917 kb on + strandat 3661.947 kb on + strandat 3663.266 kb on + strand, within ECD_03477at 3663.511 kb on + strand, within ECD_03477at 3664.348 kb on - strand, within ECD_03478

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Per-strain Table

Position Strand Gene LocusTag Fraction Ox4
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3,661,911 + -2.0
3,661,911 + -1.0
3,661,917 + -1.6
3,661,917 + -1.8
3,661,917 + +0.1
3,661,947 + -2.1
3,663,266 + ECD_03477 0.34 +3.2
3,663,511 + ECD_03477 0.58 +2.0
3,664,348 - ECD_03478 0.40 +1.7

Or see this region's nucleotide sequence