Experiment: Ox4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03270 and ECD_03271 are separated by 42 nucleotides ECD_03271 and ECD_03272 are separated by 3 nucleotides
ECD_03270: ECD_03270 - mal regulon transcriptional activator, at 3,413,381 to 3,416,086
_03270
ECD_03271: ECD_03271 - RNA 3'-terminal phosphate cyclase, at 3,416,129 to 3,417,145
_03271
ECD_03272: ECD_03272 - RNA-splicing ligase, at 3,417,149 to 3,418,375
_03272
Position (kb)
3416
3417
3418 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3415.255 kb on - strand, within ECD_03270 at 3415.255 kb on - strand, within ECD_03270 at 3415.311 kb on - strand, within ECD_03270 at 3415.311 kb on - strand, within ECD_03270 at 3415.330 kb on + strand, within ECD_03270 at 3415.355 kb on + strand, within ECD_03270 at 3415.376 kb on - strand, within ECD_03270 at 3415.567 kb on + strand, within ECD_03270 at 3415.592 kb on + strand, within ECD_03270 at 3415.592 kb on + strand, within ECD_03270 at 3415.592 kb on + strand, within ECD_03270 at 3415.592 kb on + strand, within ECD_03270 at 3415.609 kb on + strand, within ECD_03270 at 3415.610 kb on - strand, within ECD_03270 at 3415.732 kb on + strand, within ECD_03270 at 3415.735 kb on + strand, within ECD_03270 at 3415.861 kb on - strand at 3415.908 kb on + strand at 3415.909 kb on - strand at 3415.922 kb on + strand at 3415.923 kb on - strand at 3415.932 kb on - strand at 3416.075 kb on + strand at 3416.075 kb on + strand at 3416.084 kb on + strand at 3416.085 kb on - strand at 3416.117 kb on + strand at 3416.117 kb on + strand at 3416.118 kb on - strand at 3416.118 kb on - strand at 3416.165 kb on + strand at 3416.246 kb on - strand, within ECD_03271 at 3416.246 kb on - strand, within ECD_03271 at 3416.298 kb on + strand, within ECD_03271 at 3416.299 kb on - strand, within ECD_03271 at 3416.299 kb on - strand, within ECD_03271 at 3416.444 kb on - strand, within ECD_03271 at 3416.555 kb on + strand, within ECD_03271 at 3416.555 kb on + strand, within ECD_03271 at 3416.555 kb on + strand, within ECD_03271 at 3416.555 kb on + strand, within ECD_03271 at 3416.556 kb on - strand, within ECD_03271 at 3416.558 kb on + strand, within ECD_03271 at 3416.559 kb on - strand, within ECD_03271 at 3416.559 kb on - strand, within ECD_03271 at 3416.559 kb on - strand, within ECD_03271 at 3416.614 kb on + strand, within ECD_03271 at 3416.615 kb on - strand, within ECD_03271 at 3416.667 kb on + strand, within ECD_03271 at 3416.851 kb on + strand, within ECD_03271 at 3416.852 kb on - strand, within ECD_03271 at 3416.852 kb on - strand, within ECD_03271 at 3417.046 kb on + strand at 3417.046 kb on + strand at 3417.046 kb on + strand at 3417.158 kb on + strand at 3417.159 kb on - strand at 3417.159 kb on - strand at 3417.183 kb on + strand at 3417.183 kb on + strand at 3417.183 kb on + strand at 3417.184 kb on - strand at 3417.184 kb on - strand at 3417.184 kb on - strand at 3417.184 kb on - strand at 3417.184 kb on - strand at 3417.184 kb on - strand at 3417.187 kb on + strand at 3417.188 kb on - strand at 3417.230 kb on - strand at 3417.237 kb on + strand at 3417.238 kb on - strand at 3417.238 kb on - strand at 3417.238 kb on - strand at 3417.338 kb on - strand, within ECD_03272 at 3417.492 kb on + strand, within ECD_03272 at 3417.493 kb on - strand, within ECD_03272 at 3417.528 kb on + strand, within ECD_03272 at 3417.528 kb on + strand, within ECD_03272 at 3417.528 kb on + strand, within ECD_03272 at 3417.528 kb on + strand, within ECD_03272 at 3417.528 kb on + strand, within ECD_03272 at 3417.529 kb on - strand, within ECD_03272 at 3417.529 kb on - strand, within ECD_03272 at 3417.529 kb on - strand, within ECD_03272 at 3417.529 kb on - strand, within ECD_03272 at 3417.529 kb on - strand, within ECD_03272 at 3417.529 kb on - strand, within ECD_03272 at 3417.681 kb on + strand, within ECD_03272 at 3417.693 kb on + strand, within ECD_03272 at 3417.694 kb on - strand, within ECD_03272 at 3417.709 kb on + strand, within ECD_03272 at 3417.783 kb on + strand, within ECD_03272 at 3417.783 kb on + strand, within ECD_03272 at 3417.783 kb on + strand, within ECD_03272 at 3417.784 kb on - strand, within ECD_03272 at 3417.829 kb on + strand, within ECD_03272 at 3417.829 kb on + strand, within ECD_03272 at 3417.904 kb on + strand, within ECD_03272 at 3417.905 kb on - strand, within ECD_03272 at 3417.905 kb on - strand, within ECD_03272 at 3417.906 kb on + strand, within ECD_03272 at 3417.906 kb on + strand, within ECD_03272 at 3417.906 kb on + strand, within ECD_03272 at 3417.906 kb on + strand, within ECD_03272 at 3417.907 kb on - strand, within ECD_03272 at 3417.907 kb on - strand, within ECD_03272 at 3417.907 kb on - strand, within ECD_03272 at 3417.907 kb on - strand, within ECD_03272 at 3417.907 kb on - strand, within ECD_03272 at 3417.907 kb on - strand, within ECD_03272 at 3418.042 kb on + strand, within ECD_03272
Per-strain Table
Position Strand Gene LocusTag Fraction Ox4 remove 3,415,255 - ECD_03270 0.69 +0.7 3,415,255 - ECD_03270 0.69 +0.0 3,415,311 - ECD_03270 0.71 +2.7 3,415,311 - ECD_03270 0.71 -0.1 3,415,330 + ECD_03270 0.72 +0.0 3,415,355 + ECD_03270 0.73 +0.6 3,415,376 - ECD_03270 0.74 +0.7 3,415,567 + ECD_03270 0.81 +0.3 3,415,592 + ECD_03270 0.82 -0.5 3,415,592 + ECD_03270 0.82 +1.1 3,415,592 + ECD_03270 0.82 +0.3 3,415,592 + ECD_03270 0.82 +0.5 3,415,609 + ECD_03270 0.82 -1.1 3,415,610 - ECD_03270 0.82 -1.0 3,415,732 + ECD_03270 0.87 -1.4 3,415,735 + ECD_03270 0.87 +1.0 3,415,861 - -0.1 3,415,908 + -0.2 3,415,909 - +0.5 3,415,922 + +0.7 3,415,923 - +1.1 3,415,932 - +0.3 3,416,075 + +0.9 3,416,075 + +0.6 3,416,084 + +0.7 3,416,085 - +0.1 3,416,117 + -1.5 3,416,117 + +2.7 3,416,118 - +0.5 3,416,118 - +0.3 3,416,165 + -0.7 3,416,246 - ECD_03271 0.12 +0.8 3,416,246 - ECD_03271 0.12 -0.3 3,416,298 + ECD_03271 0.17 +1.1 3,416,299 - ECD_03271 0.17 -0.3 3,416,299 - ECD_03271 0.17 -0.5 3,416,444 - ECD_03271 0.31 -0.5 3,416,555 + ECD_03271 0.42 +1.4 3,416,555 + ECD_03271 0.42 +0.4 3,416,555 + ECD_03271 0.42 +0.1 3,416,555 + ECD_03271 0.42 +0.3 3,416,556 - ECD_03271 0.42 +0.1 3,416,558 + ECD_03271 0.42 +0.4 3,416,559 - ECD_03271 0.42 -0.7 3,416,559 - ECD_03271 0.42 -0.2 3,416,559 - ECD_03271 0.42 +0.8 3,416,614 + ECD_03271 0.48 -0.2 3,416,615 - ECD_03271 0.48 -0.6 3,416,667 + ECD_03271 0.53 +0.7 3,416,851 + ECD_03271 0.71 -0.0 3,416,852 - ECD_03271 0.71 +0.3 3,416,852 - ECD_03271 0.71 +0.2 3,417,046 + +0.0 3,417,046 + +0.1 3,417,046 + +0.7 3,417,158 + +0.5 3,417,159 - +0.3 3,417,159 - -0.5 3,417,183 + +0.4 3,417,183 + -0.9 3,417,183 + -1.2 3,417,184 - -0.2 3,417,184 - -0.1 3,417,184 - -0.9 3,417,184 - -0.1 3,417,184 - +0.1 3,417,184 - -1.0 3,417,187 + -2.1 3,417,188 - +0.1 3,417,230 - -0.3 3,417,237 + +0.2 3,417,238 - +0.3 3,417,238 - +0.3 3,417,238 - +1.1 3,417,338 - ECD_03272 0.15 -0.4 3,417,492 + ECD_03272 0.28 -0.9 3,417,493 - ECD_03272 0.28 +0.0 3,417,528 + ECD_03272 0.31 -0.8 3,417,528 + ECD_03272 0.31 -1.4 3,417,528 + ECD_03272 0.31 -0.3 3,417,528 + ECD_03272 0.31 +0.1 3,417,528 + ECD_03272 0.31 -0.2 3,417,529 - ECD_03272 0.31 +0.3 3,417,529 - ECD_03272 0.31 +1.4 3,417,529 - ECD_03272 0.31 +0.8 3,417,529 - ECD_03272 0.31 -1.6 3,417,529 - ECD_03272 0.31 +0.3 3,417,529 - ECD_03272 0.31 -0.1 3,417,681 + ECD_03272 0.43 +0.4 3,417,693 + ECD_03272 0.44 -0.8 3,417,694 - ECD_03272 0.44 +0.5 3,417,709 + ECD_03272 0.46 +1.1 3,417,783 + ECD_03272 0.52 -0.1 3,417,783 + ECD_03272 0.52 +0.0 3,417,783 + ECD_03272 0.52 -0.0 3,417,784 - ECD_03272 0.52 +0.4 3,417,829 + ECD_03272 0.55 +0.4 3,417,829 + ECD_03272 0.55 +0.2 3,417,904 + ECD_03272 0.62 -0.6 3,417,905 - ECD_03272 0.62 -0.2 3,417,905 - ECD_03272 0.62 -1.1 3,417,906 + ECD_03272 0.62 +0.1 3,417,906 + ECD_03272 0.62 -0.2 3,417,906 + ECD_03272 0.62 -0.6 3,417,906 + ECD_03272 0.62 -0.1 3,417,907 - ECD_03272 0.62 -0.0 3,417,907 - ECD_03272 0.62 -1.0 3,417,907 - ECD_03272 0.62 +0.1 3,417,907 - ECD_03272 0.62 -0.6 3,417,907 - ECD_03272 0.62 -0.2 3,417,907 - ECD_03272 0.62 +0.5 3,418,042 + ECD_03272 0.73 +0.4
Or see this region's nucleotide sequence