Strain Fitness in Escherichia coli BL21 around ECD_03271

Experiment: Ox4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03270 and ECD_03271 are separated by 42 nucleotidesECD_03271 and ECD_03272 are separated by 3 nucleotides ECD_03270: ECD_03270 - mal regulon transcriptional activator, at 3,413,381 to 3,416,086 _03270 ECD_03271: ECD_03271 - RNA 3'-terminal phosphate cyclase, at 3,416,129 to 3,417,145 _03271 ECD_03272: ECD_03272 - RNA-splicing ligase, at 3,417,149 to 3,418,375 _03272 Position (kb) 3416 3417 3418Strain fitness (log2 ratio) -2 -1 0 1 2at 3415.255 kb on - strand, within ECD_03270at 3415.255 kb on - strand, within ECD_03270at 3415.311 kb on - strand, within ECD_03270at 3415.311 kb on - strand, within ECD_03270at 3415.330 kb on + strand, within ECD_03270at 3415.355 kb on + strand, within ECD_03270at 3415.376 kb on - strand, within ECD_03270at 3415.567 kb on + strand, within ECD_03270at 3415.592 kb on + strand, within ECD_03270at 3415.592 kb on + strand, within ECD_03270at 3415.592 kb on + strand, within ECD_03270at 3415.592 kb on + strand, within ECD_03270at 3415.609 kb on + strand, within ECD_03270at 3415.610 kb on - strand, within ECD_03270at 3415.732 kb on + strand, within ECD_03270at 3415.735 kb on + strand, within ECD_03270at 3415.861 kb on - strandat 3415.908 kb on + strandat 3415.909 kb on - strandat 3415.922 kb on + strandat 3415.923 kb on - strandat 3415.932 kb on - strandat 3416.075 kb on + strandat 3416.075 kb on + strandat 3416.084 kb on + strandat 3416.085 kb on - strandat 3416.117 kb on + strandat 3416.117 kb on + strandat 3416.118 kb on - strandat 3416.118 kb on - strandat 3416.165 kb on + strandat 3416.246 kb on - strand, within ECD_03271at 3416.246 kb on - strand, within ECD_03271at 3416.298 kb on + strand, within ECD_03271at 3416.299 kb on - strand, within ECD_03271at 3416.299 kb on - strand, within ECD_03271at 3416.444 kb on - strand, within ECD_03271at 3416.555 kb on + strand, within ECD_03271at 3416.555 kb on + strand, within ECD_03271at 3416.555 kb on + strand, within ECD_03271at 3416.555 kb on + strand, within ECD_03271at 3416.556 kb on - strand, within ECD_03271at 3416.558 kb on + strand, within ECD_03271at 3416.559 kb on - strand, within ECD_03271at 3416.559 kb on - strand, within ECD_03271at 3416.559 kb on - strand, within ECD_03271at 3416.614 kb on + strand, within ECD_03271at 3416.615 kb on - strand, within ECD_03271at 3416.667 kb on + strand, within ECD_03271at 3416.851 kb on + strand, within ECD_03271at 3416.852 kb on - strand, within ECD_03271at 3416.852 kb on - strand, within ECD_03271at 3417.046 kb on + strandat 3417.046 kb on + strandat 3417.046 kb on + strandat 3417.158 kb on + strandat 3417.159 kb on - strandat 3417.159 kb on - strandat 3417.183 kb on + strandat 3417.183 kb on + strandat 3417.183 kb on + strandat 3417.184 kb on - strandat 3417.184 kb on - strandat 3417.184 kb on - strandat 3417.184 kb on - strandat 3417.184 kb on - strandat 3417.184 kb on - strandat 3417.187 kb on + strandat 3417.188 kb on - strandat 3417.230 kb on - strandat 3417.237 kb on + strandat 3417.238 kb on - strandat 3417.238 kb on - strandat 3417.238 kb on - strandat 3417.338 kb on - strand, within ECD_03272at 3417.492 kb on + strand, within ECD_03272at 3417.493 kb on - strand, within ECD_03272at 3417.528 kb on + strand, within ECD_03272at 3417.528 kb on + strand, within ECD_03272at 3417.528 kb on + strand, within ECD_03272at 3417.528 kb on + strand, within ECD_03272at 3417.528 kb on + strand, within ECD_03272at 3417.529 kb on - strand, within ECD_03272at 3417.529 kb on - strand, within ECD_03272at 3417.529 kb on - strand, within ECD_03272at 3417.529 kb on - strand, within ECD_03272at 3417.529 kb on - strand, within ECD_03272at 3417.529 kb on - strand, within ECD_03272at 3417.681 kb on + strand, within ECD_03272at 3417.693 kb on + strand, within ECD_03272at 3417.694 kb on - strand, within ECD_03272at 3417.709 kb on + strand, within ECD_03272at 3417.783 kb on + strand, within ECD_03272at 3417.783 kb on + strand, within ECD_03272at 3417.783 kb on + strand, within ECD_03272at 3417.784 kb on - strand, within ECD_03272at 3417.829 kb on + strand, within ECD_03272at 3417.829 kb on + strand, within ECD_03272at 3417.904 kb on + strand, within ECD_03272at 3417.905 kb on - strand, within ECD_03272at 3417.905 kb on - strand, within ECD_03272at 3417.906 kb on + strand, within ECD_03272at 3417.906 kb on + strand, within ECD_03272at 3417.906 kb on + strand, within ECD_03272at 3417.906 kb on + strand, within ECD_03272at 3417.907 kb on - strand, within ECD_03272at 3417.907 kb on - strand, within ECD_03272at 3417.907 kb on - strand, within ECD_03272at 3417.907 kb on - strand, within ECD_03272at 3417.907 kb on - strand, within ECD_03272at 3417.907 kb on - strand, within ECD_03272at 3418.042 kb on + strand, within ECD_03272

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Per-strain Table

Position Strand Gene LocusTag Fraction Ox4
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3,415,255 - ECD_03270 0.69 +0.7
3,415,255 - ECD_03270 0.69 +0.0
3,415,311 - ECD_03270 0.71 +2.7
3,415,311 - ECD_03270 0.71 -0.1
3,415,330 + ECD_03270 0.72 +0.0
3,415,355 + ECD_03270 0.73 +0.6
3,415,376 - ECD_03270 0.74 +0.7
3,415,567 + ECD_03270 0.81 +0.3
3,415,592 + ECD_03270 0.82 -0.5
3,415,592 + ECD_03270 0.82 +1.1
3,415,592 + ECD_03270 0.82 +0.3
3,415,592 + ECD_03270 0.82 +0.5
3,415,609 + ECD_03270 0.82 -1.1
3,415,610 - ECD_03270 0.82 -1.0
3,415,732 + ECD_03270 0.87 -1.4
3,415,735 + ECD_03270 0.87 +1.0
3,415,861 - -0.1
3,415,908 + -0.2
3,415,909 - +0.5
3,415,922 + +0.7
3,415,923 - +1.1
3,415,932 - +0.3
3,416,075 + +0.9
3,416,075 + +0.6
3,416,084 + +0.7
3,416,085 - +0.1
3,416,117 + -1.5
3,416,117 + +2.7
3,416,118 - +0.5
3,416,118 - +0.3
3,416,165 + -0.7
3,416,246 - ECD_03271 0.12 +0.8
3,416,246 - ECD_03271 0.12 -0.3
3,416,298 + ECD_03271 0.17 +1.1
3,416,299 - ECD_03271 0.17 -0.3
3,416,299 - ECD_03271 0.17 -0.5
3,416,444 - ECD_03271 0.31 -0.5
3,416,555 + ECD_03271 0.42 +1.4
3,416,555 + ECD_03271 0.42 +0.4
3,416,555 + ECD_03271 0.42 +0.1
3,416,555 + ECD_03271 0.42 +0.3
3,416,556 - ECD_03271 0.42 +0.1
3,416,558 + ECD_03271 0.42 +0.4
3,416,559 - ECD_03271 0.42 -0.7
3,416,559 - ECD_03271 0.42 -0.2
3,416,559 - ECD_03271 0.42 +0.8
3,416,614 + ECD_03271 0.48 -0.2
3,416,615 - ECD_03271 0.48 -0.6
3,416,667 + ECD_03271 0.53 +0.7
3,416,851 + ECD_03271 0.71 -0.0
3,416,852 - ECD_03271 0.71 +0.3
3,416,852 - ECD_03271 0.71 +0.2
3,417,046 + +0.0
3,417,046 + +0.1
3,417,046 + +0.7
3,417,158 + +0.5
3,417,159 - +0.3
3,417,159 - -0.5
3,417,183 + +0.4
3,417,183 + -0.9
3,417,183 + -1.2
3,417,184 - -0.2
3,417,184 - -0.1
3,417,184 - -0.9
3,417,184 - -0.1
3,417,184 - +0.1
3,417,184 - -1.0
3,417,187 + -2.1
3,417,188 - +0.1
3,417,230 - -0.3
3,417,237 + +0.2
3,417,238 - +0.3
3,417,238 - +0.3
3,417,238 - +1.1
3,417,338 - ECD_03272 0.15 -0.4
3,417,492 + ECD_03272 0.28 -0.9
3,417,493 - ECD_03272 0.28 +0.0
3,417,528 + ECD_03272 0.31 -0.8
3,417,528 + ECD_03272 0.31 -1.4
3,417,528 + ECD_03272 0.31 -0.3
3,417,528 + ECD_03272 0.31 +0.1
3,417,528 + ECD_03272 0.31 -0.2
3,417,529 - ECD_03272 0.31 +0.3
3,417,529 - ECD_03272 0.31 +1.4
3,417,529 - ECD_03272 0.31 +0.8
3,417,529 - ECD_03272 0.31 -1.6
3,417,529 - ECD_03272 0.31 +0.3
3,417,529 - ECD_03272 0.31 -0.1
3,417,681 + ECD_03272 0.43 +0.4
3,417,693 + ECD_03272 0.44 -0.8
3,417,694 - ECD_03272 0.44 +0.5
3,417,709 + ECD_03272 0.46 +1.1
3,417,783 + ECD_03272 0.52 -0.1
3,417,783 + ECD_03272 0.52 +0.0
3,417,783 + ECD_03272 0.52 -0.0
3,417,784 - ECD_03272 0.52 +0.4
3,417,829 + ECD_03272 0.55 +0.4
3,417,829 + ECD_03272 0.55 +0.2
3,417,904 + ECD_03272 0.62 -0.6
3,417,905 - ECD_03272 0.62 -0.2
3,417,905 - ECD_03272 0.62 -1.1
3,417,906 + ECD_03272 0.62 +0.1
3,417,906 + ECD_03272 0.62 -0.2
3,417,906 + ECD_03272 0.62 -0.6
3,417,906 + ECD_03272 0.62 -0.1
3,417,907 - ECD_03272 0.62 -0.0
3,417,907 - ECD_03272 0.62 -1.0
3,417,907 - ECD_03272 0.62 +0.1
3,417,907 - ECD_03272 0.62 -0.6
3,417,907 - ECD_03272 0.62 -0.2
3,417,907 - ECD_03272 0.62 +0.5
3,418,042 + ECD_03272 0.73 +0.4

Or see this region's nucleotide sequence