Experiment: Ox4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02926 and ECD_02927 are separated by 162 nucleotides ECD_02927 and ECD_02928 are separated by 90 nucleotides ECD_02928 and ECD_02929 are separated by 104 nucleotides
ECD_02926: ECD_02926 - fused tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase and phosphatase, at 3,067,990 to 3,069,228
_02926
ECD_02927: ECD_02927 - undecaprenyl pyrophosphate phosphatase, at 3,069,391 to 3,070,212
_02927
ECD_02928: ECD_02928 - dihydroneopterin aldolase and dihydroneopterin triphosphate 2'-epimerase, at 3,070,303 to 3,070,671
_02928
ECD_02929: ECD_02929 - putative glycerol-3-phosphate acyltransferase, at 3,070,776 to 3,071,393
_02929
Position (kb)
3069
3070
3071 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3069.232 kb on + strand at 3069.232 kb on + strand at 3069.239 kb on - strand at 3069.407 kb on + strand at 3069.408 kb on - strand at 3069.408 kb on - strand at 3069.408 kb on - strand at 3069.427 kb on - strand at 3069.738 kb on + strand, within ECD_02927 at 3069.739 kb on - strand, within ECD_02927 at 3069.752 kb on + strand, within ECD_02927 at 3069.753 kb on - strand, within ECD_02927 at 3069.753 kb on - strand, within ECD_02927 at 3069.760 kb on - strand, within ECD_02927 at 3069.843 kb on - strand, within ECD_02927 at 3069.843 kb on - strand, within ECD_02927 at 3069.853 kb on + strand, within ECD_02927 at 3069.873 kb on + strand, within ECD_02927 at 3069.874 kb on - strand, within ECD_02927 at 3070.031 kb on - strand, within ECD_02927 at 3070.031 kb on - strand, within ECD_02927 at 3070.034 kb on - strand, within ECD_02927 at 3070.122 kb on + strand, within ECD_02927 at 3070.123 kb on - strand, within ECD_02927 at 3070.178 kb on - strand at 3070.231 kb on + strand at 3070.263 kb on + strand at 3070.263 kb on + strand at 3070.275 kb on - strand at 3070.276 kb on + strand at 3070.726 kb on - strand at 3070.726 kb on - strand at 3070.729 kb on - strand at 3070.775 kb on + strand at 3070.775 kb on + strand at 3070.775 kb on + strand at 3070.776 kb on - strand at 3070.776 kb on - strand at 3070.776 kb on - strand at 3070.776 kb on - strand at 3070.776 kb on - strand at 3070.776 kb on - strand at 3070.915 kb on + strand, within ECD_02929 at 3070.915 kb on + strand, within ECD_02929 at 3070.916 kb on - strand, within ECD_02929 at 3070.916 kb on - strand, within ECD_02929 at 3070.920 kb on - strand, within ECD_02929 at 3070.942 kb on + strand, within ECD_02929 at 3071.002 kb on + strand, within ECD_02929 at 3071.003 kb on - strand, within ECD_02929 at 3071.029 kb on + strand, within ECD_02929 at 3071.029 kb on + strand, within ECD_02929 at 3071.030 kb on - strand, within ECD_02929 at 3071.030 kb on - strand, within ECD_02929 at 3071.030 kb on - strand, within ECD_02929 at 3071.179 kb on + strand, within ECD_02929 at 3071.179 kb on + strand, within ECD_02929 at 3071.180 kb on - strand, within ECD_02929 at 3071.180 kb on - strand, within ECD_02929
Per-strain Table
Position Strand Gene LocusTag Fraction Ox4 remove 3,069,232 + -0.4 3,069,232 + -0.3 3,069,239 - +0.5 3,069,407 + +0.7 3,069,408 - +0.5 3,069,408 - -0.1 3,069,408 - -0.2 3,069,427 - +0.3 3,069,738 + ECD_02927 0.42 +0.9 3,069,739 - ECD_02927 0.42 +3.7 3,069,752 + ECD_02927 0.44 +0.1 3,069,753 - ECD_02927 0.44 +1.8 3,069,753 - ECD_02927 0.44 +1.5 3,069,760 - ECD_02927 0.45 +2.7 3,069,843 - ECD_02927 0.55 +1.7 3,069,843 - ECD_02927 0.55 +1.0 3,069,853 + ECD_02927 0.56 +0.8 3,069,873 + ECD_02927 0.59 +0.3 3,069,874 - ECD_02927 0.59 +0.8 3,070,031 - ECD_02927 0.78 -0.2 3,070,031 - ECD_02927 0.78 +1.9 3,070,034 - ECD_02927 0.78 -0.1 3,070,122 + ECD_02927 0.89 +0.3 3,070,123 - ECD_02927 0.89 -0.9 3,070,178 - +0.0 3,070,231 + -0.2 3,070,263 + -0.6 3,070,263 + +0.4 3,070,275 - -1.0 3,070,276 + +0.2 3,070,726 - -2.8 3,070,726 - -0.2 3,070,729 - +2.7 3,070,775 + -0.2 3,070,775 + -1.5 3,070,775 + +0.8 3,070,776 - -1.4 3,070,776 - +2.2 3,070,776 - +0.8 3,070,776 - -2.0 3,070,776 - +2.0 3,070,776 - -1.0 3,070,915 + ECD_02929 0.22 -0.3 3,070,915 + ECD_02929 0.22 -0.9 3,070,916 - ECD_02929 0.23 -1.0 3,070,916 - ECD_02929 0.23 +0.0 3,070,920 - ECD_02929 0.23 +1.3 3,070,942 + ECD_02929 0.27 -1.5 3,071,002 + ECD_02929 0.37 +0.8 3,071,003 - ECD_02929 0.37 +1.6 3,071,029 + ECD_02929 0.41 -0.4 3,071,029 + ECD_02929 0.41 -2.2 3,071,030 - ECD_02929 0.41 +1.7 3,071,030 - ECD_02929 0.41 +0.4 3,071,030 - ECD_02929 0.41 +1.6 3,071,179 + ECD_02929 0.65 -0.4 3,071,179 + ECD_02929 0.65 -1.7 3,071,180 - ECD_02929 0.65 -0.4 3,071,180 - ECD_02929 0.65 -1.3
Or see this region's nucleotide sequence