Experiment: Ox4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02924 and ECD_02925 are separated by 241 nucleotides ECD_02925 and ECD_02926 are separated by 63 nucleotides ECD_02926 and ECD_02927 are separated by 162 nucleotides
ECD_02924: ECD_02924 - inorganic triphosphatase, at 3,065,763 to 3,067,064
_02924
ECD_02925: ECD_02925 - SH3 domain protein, at 3,067,306 to 3,067,926
_02925
ECD_02926: ECD_02926 - fused tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase and phosphatase, at 3,067,990 to 3,069,228
_02926
ECD_02927: ECD_02927 - undecaprenyl pyrophosphate phosphatase, at 3,069,391 to 3,070,212
_02927
Position (kb)
3067
3068
3069
3070 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3066.993 kb on - strand at 3067.032 kb on - strand at 3067.038 kb on - strand at 3067.071 kb on + strand at 3067.072 kb on - strand at 3067.091 kb on + strand at 3067.091 kb on + strand at 3067.091 kb on + strand at 3067.092 kb on - strand at 3067.092 kb on - strand at 3067.092 kb on - strand at 3067.092 kb on - strand at 3067.092 kb on - strand at 3067.092 kb on - strand at 3067.092 kb on - strand at 3067.092 kb on - strand at 3067.092 kb on - strand at 3067.135 kb on + strand at 3067.136 kb on - strand at 3067.136 kb on - strand at 3067.136 kb on - strand at 3067.140 kb on - strand at 3067.140 kb on - strand at 3067.142 kb on + strand at 3067.143 kb on - strand at 3067.143 kb on - strand at 3067.185 kb on + strand at 3067.267 kb on + strand at 3067.268 kb on - strand at 3067.332 kb on - strand at 3067.404 kb on + strand, within ECD_02925 at 3067.405 kb on - strand, within ECD_02925 at 3067.405 kb on - strand, within ECD_02925 at 3067.435 kb on + strand, within ECD_02925 at 3067.478 kb on + strand, within ECD_02925 at 3067.478 kb on + strand, within ECD_02925 at 3067.478 kb on + strand, within ECD_02925 at 3067.481 kb on + strand, within ECD_02925 at 3067.504 kb on + strand, within ECD_02925 at 3067.504 kb on + strand, within ECD_02925 at 3067.504 kb on + strand, within ECD_02925 at 3067.561 kb on - strand, within ECD_02925 at 3067.561 kb on - strand, within ECD_02925 at 3067.561 kb on - strand, within ECD_02925 at 3067.561 kb on - strand, within ECD_02925 at 3067.561 kb on - strand, within ECD_02925 at 3067.626 kb on + strand, within ECD_02925 at 3067.639 kb on - strand, within ECD_02925 at 3067.784 kb on + strand, within ECD_02925 at 3067.827 kb on + strand, within ECD_02925 at 3067.827 kb on + strand, within ECD_02925 at 3067.827 kb on + strand, within ECD_02925 at 3067.827 kb on + strand, within ECD_02925 at 3067.827 kb on + strand, within ECD_02925 at 3067.827 kb on + strand, within ECD_02925 at 3067.828 kb on - strand, within ECD_02925 at 3067.828 kb on - strand, within ECD_02925 at 3067.831 kb on + strand, within ECD_02925 at 3067.831 kb on + strand, within ECD_02925 at 3067.831 kb on + strand, within ECD_02925 at 3067.832 kb on - strand, within ECD_02925 at 3067.832 kb on - strand, within ECD_02925 at 3067.832 kb on - strand, within ECD_02925 at 3067.925 kb on - strand at 3067.952 kb on - strand at 3067.952 kb on - strand at 3067.952 kb on - strand at 3067.954 kb on + strand at 3067.957 kb on + strand at 3067.957 kb on + strand at 3067.957 kb on + strand at 3067.968 kb on + strand at 3067.968 kb on + strand at 3069.232 kb on + strand at 3069.232 kb on + strand at 3069.239 kb on - strand at 3069.407 kb on + strand at 3069.408 kb on - strand at 3069.408 kb on - strand at 3069.408 kb on - strand at 3069.427 kb on - strand at 3069.738 kb on + strand, within ECD_02927 at 3069.739 kb on - strand, within ECD_02927 at 3069.752 kb on + strand, within ECD_02927 at 3069.753 kb on - strand, within ECD_02927 at 3069.753 kb on - strand, within ECD_02927 at 3069.760 kb on - strand, within ECD_02927 at 3069.843 kb on - strand, within ECD_02927 at 3069.843 kb on - strand, within ECD_02927 at 3069.853 kb on + strand, within ECD_02927 at 3069.873 kb on + strand, within ECD_02927 at 3069.874 kb on - strand, within ECD_02927 at 3070.031 kb on - strand, within ECD_02927 at 3070.031 kb on - strand, within ECD_02927 at 3070.034 kb on - strand, within ECD_02927 at 3070.122 kb on + strand, within ECD_02927 at 3070.123 kb on - strand, within ECD_02927 at 3070.178 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ox4 remove 3,066,993 - +2.2 3,067,032 - -1.6 3,067,038 - -0.6 3,067,071 + -1.1 3,067,072 - -1.0 3,067,091 + -0.6 3,067,091 + -3.1 3,067,091 + -1.1 3,067,092 - -0.9 3,067,092 - +0.3 3,067,092 - -0.6 3,067,092 - -0.4 3,067,092 - -0.6 3,067,092 - -0.5 3,067,092 - +0.8 3,067,092 - -0.4 3,067,092 - +1.9 3,067,135 + +0.3 3,067,136 - -0.8 3,067,136 - -1.9 3,067,136 - -1.7 3,067,140 - +0.8 3,067,140 - -1.2 3,067,142 + -2.6 3,067,143 - +2.4 3,067,143 - +0.2 3,067,185 + -0.9 3,067,267 + -1.2 3,067,268 - -1.1 3,067,332 - -1.6 3,067,404 + ECD_02925 0.16 +0.1 3,067,405 - ECD_02925 0.16 -0.3 3,067,405 - ECD_02925 0.16 -0.3 3,067,435 + ECD_02925 0.21 +0.9 3,067,478 + ECD_02925 0.28 +3.6 3,067,478 + ECD_02925 0.28 -0.3 3,067,478 + ECD_02925 0.28 -0.9 3,067,481 + ECD_02925 0.28 -0.7 3,067,504 + ECD_02925 0.32 -1.5 3,067,504 + ECD_02925 0.32 +1.6 3,067,504 + ECD_02925 0.32 -0.5 3,067,561 - ECD_02925 0.41 +0.1 3,067,561 - ECD_02925 0.41 -0.4 3,067,561 - ECD_02925 0.41 +2.7 3,067,561 - ECD_02925 0.41 -1.6 3,067,561 - ECD_02925 0.41 +1.0 3,067,626 + ECD_02925 0.52 +1.3 3,067,639 - ECD_02925 0.54 -0.8 3,067,784 + ECD_02925 0.77 +1.2 3,067,827 + ECD_02925 0.84 -0.4 3,067,827 + ECD_02925 0.84 +2.8 3,067,827 + ECD_02925 0.84 -1.5 3,067,827 + ECD_02925 0.84 -0.8 3,067,827 + ECD_02925 0.84 -1.0 3,067,827 + ECD_02925 0.84 +0.7 3,067,828 - ECD_02925 0.84 -1.3 3,067,828 - ECD_02925 0.84 -1.1 3,067,831 + ECD_02925 0.85 +3.5 3,067,831 + ECD_02925 0.85 +2.4 3,067,831 + ECD_02925 0.85 +2.3 3,067,832 - ECD_02925 0.85 -0.6 3,067,832 - ECD_02925 0.85 -0.3 3,067,832 - ECD_02925 0.85 -1.2 3,067,925 - -0.8 3,067,952 - -0.5 3,067,952 - +3.0 3,067,952 - -1.1 3,067,954 + +0.0 3,067,957 + -0.6 3,067,957 + +0.8 3,067,957 + -1.0 3,067,968 + -0.4 3,067,968 + -0.8 3,069,232 + -0.4 3,069,232 + -0.3 3,069,239 - +0.5 3,069,407 + +0.7 3,069,408 - +0.5 3,069,408 - -0.1 3,069,408 - -0.2 3,069,427 - +0.3 3,069,738 + ECD_02927 0.42 +0.9 3,069,739 - ECD_02927 0.42 +3.7 3,069,752 + ECD_02927 0.44 +0.1 3,069,753 - ECD_02927 0.44 +1.8 3,069,753 - ECD_02927 0.44 +1.5 3,069,760 - ECD_02927 0.45 +2.7 3,069,843 - ECD_02927 0.55 +1.7 3,069,843 - ECD_02927 0.55 +1.0 3,069,853 + ECD_02927 0.56 +0.8 3,069,873 + ECD_02927 0.59 +0.3 3,069,874 - ECD_02927 0.59 +0.8 3,070,031 - ECD_02927 0.78 -0.2 3,070,031 - ECD_02927 0.78 +1.9 3,070,034 - ECD_02927 0.78 -0.1 3,070,122 + ECD_02927 0.89 +0.3 3,070,123 - ECD_02927 0.89 -0.9 3,070,178 - +0.0
Or see this region's nucleotide sequence