Strain Fitness in Escherichia coli BL21 around ECD_02828

Experiment: Ox4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02826 and ECD_02827 are separated by 208 nucleotidesECD_02827 and ECD_02828 are separated by 14 nucleotides ECD_02826: ECD_02826 - hypothetical protein, at 2,958,773 to 2,960,149 _02826 ECD_02827: ECD_02827 - Polysialic acid transport ATP-binding KpsT, at 2,960,358 to 2,961,017 _02827 ECD_02828: ECD_02828 - Polysialic acid transport protein kpsM, at 2,961,032 to 2,961,808 _02828 Position (kb) 2961 2962Strain fitness (log2 ratio) -2 -1 0 1at 2960.980 kb on + strandat 2961.093 kb on - strandat 2961.115 kb on - strand, within ECD_02828at 2961.142 kb on - strand, within ECD_02828at 2961.151 kb on + strand, within ECD_02828at 2961.167 kb on + strand, within ECD_02828at 2961.182 kb on + strand, within ECD_02828at 2961.182 kb on + strand, within ECD_02828at 2961.182 kb on + strand, within ECD_02828at 2961.183 kb on - strand, within ECD_02828at 2961.200 kb on + strand, within ECD_02828at 2961.201 kb on - strand, within ECD_02828at 2961.445 kb on + strand, within ECD_02828at 2961.445 kb on + strand, within ECD_02828at 2961.523 kb on + strand, within ECD_02828at 2961.523 kb on + strand, within ECD_02828at 2961.554 kb on + strand, within ECD_02828at 2961.609 kb on - strand, within ECD_02828at 2961.649 kb on + strand, within ECD_02828at 2961.747 kb on - strandat 2961.881 kb on - strandat 2961.935 kb on - strandat 2962.704 kb on + strandat 2962.777 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ox4
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2,960,980 + -0.2
2,961,093 - -0.6
2,961,115 - ECD_02828 0.11 -1.6
2,961,142 - ECD_02828 0.14 -0.8
2,961,151 + ECD_02828 0.15 -0.6
2,961,167 + ECD_02828 0.17 -0.5
2,961,182 + ECD_02828 0.19 -0.9
2,961,182 + ECD_02828 0.19 -0.5
2,961,182 + ECD_02828 0.19 -0.5
2,961,183 - ECD_02828 0.19 -0.3
2,961,200 + ECD_02828 0.22 -2.0
2,961,201 - ECD_02828 0.22 -0.6
2,961,445 + ECD_02828 0.53 -0.4
2,961,445 + ECD_02828 0.53 -0.8
2,961,523 + ECD_02828 0.63 -1.0
2,961,523 + ECD_02828 0.63 -1.1
2,961,554 + ECD_02828 0.67 -2.6
2,961,609 - ECD_02828 0.74 -0.5
2,961,649 + ECD_02828 0.79 -0.6
2,961,747 - -0.6
2,961,881 - -1.4
2,961,935 - -0.3
2,962,704 + +0.3
2,962,777 - -1.6

Or see this region's nucleotide sequence