Experiment: Ox4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02795 and ECD_02796 are separated by 392 nucleotides ECD_02796 and ECD_t00055 are separated by 105 nucleotides ECD_t00055 and ECD_02797 are separated by 272 nucleotides
ECD_02795: ECD_02795 - ornithine decarboxylase, constitutive, at 2,937,787 to 2,939,922
_02795
ECD_02796: ECD_02796 - DUF554 family putative inner membrane protein, at 2,940,315 to 2,941,022
_02796
ECD_t00055: ECD_t00055 - tRNA-Phe, at 2,941,128 to 2,941,203
_t00055
ECD_02797: ECD_02797 - integrase, at 2,941,476 to 2,942,360
_02797
Position (kb)
2940
2941
2942 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2939.363 kb on - strand, within ECD_02795 at 2939.370 kb on - strand, within ECD_02795 at 2939.370 kb on - strand, within ECD_02795 at 2939.370 kb on - strand, within ECD_02795 at 2939.370 kb on - strand, within ECD_02795 at 2939.370 kb on - strand, within ECD_02795 at 2939.466 kb on + strand, within ECD_02795 at 2939.467 kb on - strand, within ECD_02795 at 2939.472 kb on + strand, within ECD_02795 at 2939.473 kb on - strand, within ECD_02795 at 2939.473 kb on - strand, within ECD_02795 at 2939.536 kb on - strand, within ECD_02795 at 2939.594 kb on + strand, within ECD_02795 at 2939.714 kb on - strand at 2939.714 kb on - strand at 2939.770 kb on - strand at 2939.842 kb on - strand at 2939.842 kb on - strand at 2939.872 kb on - strand at 2939.908 kb on - strand at 2939.908 kb on - strand at 2939.948 kb on + strand at 2939.948 kb on + strand at 2939.948 kb on + strand at 2939.949 kb on - strand at 2939.949 kb on - strand at 2939.949 kb on - strand at 2939.949 kb on - strand at 2939.949 kb on - strand at 2939.988 kb on + strand at 2939.988 kb on + strand at 2940.031 kb on - strand at 2940.031 kb on - strand at 2940.053 kb on + strand at 2940.145 kb on + strand at 2940.145 kb on + strand at 2940.145 kb on + strand at 2940.146 kb on - strand at 2940.146 kb on - strand at 2940.146 kb on - strand at 2940.146 kb on - strand at 2940.176 kb on + strand at 2940.279 kb on + strand at 2940.295 kb on + strand at 2940.332 kb on + strand at 2940.333 kb on - strand at 2940.349 kb on + strand at 2940.349 kb on + strand at 2940.350 kb on - strand at 2940.402 kb on - strand, within ECD_02796 at 2940.458 kb on - strand, within ECD_02796 at 2940.497 kb on - strand, within ECD_02796 at 2940.596 kb on + strand, within ECD_02796 at 2940.596 kb on + strand, within ECD_02796 at 2940.596 kb on + strand, within ECD_02796 at 2940.597 kb on - strand, within ECD_02796 at 2940.597 kb on - strand, within ECD_02796 at 2940.597 kb on - strand, within ECD_02796 at 2940.620 kb on + strand, within ECD_02796 at 2940.630 kb on + strand, within ECD_02796 at 2940.630 kb on + strand, within ECD_02796 at 2940.630 kb on + strand, within ECD_02796 at 2940.631 kb on - strand, within ECD_02796 at 2940.641 kb on + strand, within ECD_02796 at 2940.642 kb on - strand, within ECD_02796 at 2940.714 kb on - strand, within ECD_02796 at 2940.805 kb on + strand, within ECD_02796 at 2940.847 kb on + strand, within ECD_02796 at 2940.850 kb on + strand, within ECD_02796 at 2940.922 kb on + strand, within ECD_02796 at 2940.938 kb on + strand, within ECD_02796 at 2941.052 kb on + strand at 2941.052 kb on + strand at 2941.053 kb on - strand at 2941.071 kb on + strand at 2941.288 kb on - strand at 2941.335 kb on + strand at 2941.345 kb on + strand at 2941.347 kb on + strand at 2941.348 kb on - strand at 2941.401 kb on - strand at 2941.453 kb on - strand at 2941.490 kb on - strand at 2941.490 kb on - strand at 2941.500 kb on - strand at 2941.530 kb on - strand at 2941.566 kb on + strand, within ECD_02797 at 2941.700 kb on + strand, within ECD_02797 at 2941.700 kb on + strand, within ECD_02797 at 2941.701 kb on - strand, within ECD_02797 at 2941.912 kb on + strand, within ECD_02797 at 2941.913 kb on - strand, within ECD_02797 at 2941.920 kb on + strand, within ECD_02797 at 2941.927 kb on + strand, within ECD_02797 at 2941.928 kb on - strand, within ECD_02797 at 2941.947 kb on + strand, within ECD_02797 at 2941.948 kb on - strand, within ECD_02797 at 2941.948 kb on - strand, within ECD_02797 at 2941.948 kb on - strand, within ECD_02797
Per-strain Table
Position Strand Gene LocusTag Fraction Ox4 remove 2,939,363 - ECD_02795 0.74 -0.9 2,939,370 - ECD_02795 0.74 +2.0 2,939,370 - ECD_02795 0.74 -0.7 2,939,370 - ECD_02795 0.74 -2.4 2,939,370 - ECD_02795 0.74 +1.3 2,939,370 - ECD_02795 0.74 -2.0 2,939,466 + ECD_02795 0.79 +2.7 2,939,467 - ECD_02795 0.79 +1.8 2,939,472 + ECD_02795 0.79 +0.4 2,939,473 - ECD_02795 0.79 +2.4 2,939,473 - ECD_02795 0.79 -0.0 2,939,536 - ECD_02795 0.82 -0.3 2,939,594 + ECD_02795 0.85 -0.6 2,939,714 - -0.2 2,939,714 - -0.1 2,939,770 - +2.0 2,939,842 - -0.7 2,939,842 - +0.5 2,939,872 - -1.5 2,939,908 - +2.2 2,939,908 - -0.9 2,939,948 + -0.2 2,939,948 + +2.5 2,939,948 + +1.7 2,939,949 - -0.7 2,939,949 - -0.5 2,939,949 - +2.6 2,939,949 - -0.3 2,939,949 - -0.9 2,939,988 + -1.0 2,939,988 + -0.1 2,940,031 - +2.9 2,940,031 - -2.5 2,940,053 + +1.7 2,940,145 + +3.0 2,940,145 + -1.0 2,940,145 + -0.7 2,940,146 - -0.2 2,940,146 - -1.3 2,940,146 - -0.5 2,940,146 - -1.6 2,940,176 + +0.6 2,940,279 + -0.5 2,940,295 + +0.2 2,940,332 + +0.5 2,940,333 - -0.4 2,940,349 + -0.1 2,940,349 + -0.4 2,940,350 - -0.2 2,940,402 - ECD_02796 0.12 -0.9 2,940,458 - ECD_02796 0.20 +1.5 2,940,497 - ECD_02796 0.26 -0.9 2,940,596 + ECD_02796 0.40 -0.4 2,940,596 + ECD_02796 0.40 -0.8 2,940,596 + ECD_02796 0.40 -1.3 2,940,597 - ECD_02796 0.40 -0.5 2,940,597 - ECD_02796 0.40 -2.1 2,940,597 - ECD_02796 0.40 +3.0 2,940,620 + ECD_02796 0.43 -0.2 2,940,630 + ECD_02796 0.44 -2.8 2,940,630 + ECD_02796 0.44 +2.0 2,940,630 + ECD_02796 0.44 +0.5 2,940,631 - ECD_02796 0.45 -0.8 2,940,641 + ECD_02796 0.46 +2.2 2,940,642 - ECD_02796 0.46 +3.0 2,940,714 - ECD_02796 0.56 +0.1 2,940,805 + ECD_02796 0.69 -0.7 2,940,847 + ECD_02796 0.75 -0.0 2,940,850 + ECD_02796 0.76 -1.1 2,940,922 + ECD_02796 0.86 +0.0 2,940,938 + ECD_02796 0.88 -1.1 2,941,052 + -0.9 2,941,052 + -0.2 2,941,053 - -1.6 2,941,071 + +0.2 2,941,288 - -0.1 2,941,335 + -1.1 2,941,345 + -1.7 2,941,347 + -0.6 2,941,348 - +0.1 2,941,401 - -1.2 2,941,453 - -0.6 2,941,490 - -1.8 2,941,490 - -1.8 2,941,500 - -0.7 2,941,530 - -0.5 2,941,566 + ECD_02797 0.10 +1.4 2,941,700 + ECD_02797 0.25 -0.2 2,941,700 + ECD_02797 0.25 -1.6 2,941,701 - ECD_02797 0.25 -2.1 2,941,912 + ECD_02797 0.49 -0.6 2,941,913 - ECD_02797 0.49 -1.3 2,941,920 + ECD_02797 0.50 +0.6 2,941,927 + ECD_02797 0.51 -0.3 2,941,928 - ECD_02797 0.51 -0.4 2,941,947 + ECD_02797 0.53 -0.2 2,941,948 - ECD_02797 0.53 -0.8 2,941,948 - ECD_02797 0.53 -1.7 2,941,948 - ECD_02797 0.53 -0.4
Or see this region's nucleotide sequence