Strain Fitness in Escherichia coli BL21 around ECD_02796

Experiment: Ox4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02795 and ECD_02796 are separated by 392 nucleotidesECD_02796 and ECD_t00055 are separated by 105 nucleotidesECD_t00055 and ECD_02797 are separated by 272 nucleotides ECD_02795: ECD_02795 - ornithine decarboxylase, constitutive, at 2,937,787 to 2,939,922 _02795 ECD_02796: ECD_02796 - DUF554 family putative inner membrane protein, at 2,940,315 to 2,941,022 _02796 ECD_t00055: ECD_t00055 - tRNA-Phe, at 2,941,128 to 2,941,203 _t00055 ECD_02797: ECD_02797 - integrase, at 2,941,476 to 2,942,360 _02797 Position (kb) 2940 2941 2942Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2939.363 kb on - strand, within ECD_02795at 2939.370 kb on - strand, within ECD_02795at 2939.370 kb on - strand, within ECD_02795at 2939.370 kb on - strand, within ECD_02795at 2939.370 kb on - strand, within ECD_02795at 2939.370 kb on - strand, within ECD_02795at 2939.466 kb on + strand, within ECD_02795at 2939.467 kb on - strand, within ECD_02795at 2939.472 kb on + strand, within ECD_02795at 2939.473 kb on - strand, within ECD_02795at 2939.473 kb on - strand, within ECD_02795at 2939.536 kb on - strand, within ECD_02795at 2939.594 kb on + strand, within ECD_02795at 2939.714 kb on - strandat 2939.714 kb on - strandat 2939.770 kb on - strandat 2939.842 kb on - strandat 2939.842 kb on - strandat 2939.872 kb on - strandat 2939.908 kb on - strandat 2939.908 kb on - strandat 2939.948 kb on + strandat 2939.948 kb on + strandat 2939.948 kb on + strandat 2939.949 kb on - strandat 2939.949 kb on - strandat 2939.949 kb on - strandat 2939.949 kb on - strandat 2939.949 kb on - strandat 2939.988 kb on + strandat 2939.988 kb on + strandat 2940.031 kb on - strandat 2940.031 kb on - strandat 2940.053 kb on + strandat 2940.145 kb on + strandat 2940.145 kb on + strandat 2940.145 kb on + strandat 2940.146 kb on - strandat 2940.146 kb on - strandat 2940.146 kb on - strandat 2940.146 kb on - strandat 2940.176 kb on + strandat 2940.279 kb on + strandat 2940.295 kb on + strandat 2940.332 kb on + strandat 2940.333 kb on - strandat 2940.349 kb on + strandat 2940.349 kb on + strandat 2940.350 kb on - strandat 2940.402 kb on - strand, within ECD_02796at 2940.458 kb on - strand, within ECD_02796at 2940.497 kb on - strand, within ECD_02796at 2940.596 kb on + strand, within ECD_02796at 2940.596 kb on + strand, within ECD_02796at 2940.596 kb on + strand, within ECD_02796at 2940.597 kb on - strand, within ECD_02796at 2940.597 kb on - strand, within ECD_02796at 2940.597 kb on - strand, within ECD_02796at 2940.620 kb on + strand, within ECD_02796at 2940.630 kb on + strand, within ECD_02796at 2940.630 kb on + strand, within ECD_02796at 2940.630 kb on + strand, within ECD_02796at 2940.631 kb on - strand, within ECD_02796at 2940.641 kb on + strand, within ECD_02796at 2940.642 kb on - strand, within ECD_02796at 2940.714 kb on - strand, within ECD_02796at 2940.805 kb on + strand, within ECD_02796at 2940.847 kb on + strand, within ECD_02796at 2940.850 kb on + strand, within ECD_02796at 2940.922 kb on + strand, within ECD_02796at 2940.938 kb on + strand, within ECD_02796at 2941.052 kb on + strandat 2941.052 kb on + strandat 2941.053 kb on - strandat 2941.071 kb on + strandat 2941.288 kb on - strandat 2941.335 kb on + strandat 2941.345 kb on + strandat 2941.347 kb on + strandat 2941.348 kb on - strandat 2941.401 kb on - strandat 2941.453 kb on - strandat 2941.490 kb on - strandat 2941.490 kb on - strandat 2941.500 kb on - strandat 2941.530 kb on - strandat 2941.566 kb on + strand, within ECD_02797at 2941.700 kb on + strand, within ECD_02797at 2941.700 kb on + strand, within ECD_02797at 2941.701 kb on - strand, within ECD_02797at 2941.912 kb on + strand, within ECD_02797at 2941.913 kb on - strand, within ECD_02797at 2941.920 kb on + strand, within ECD_02797at 2941.927 kb on + strand, within ECD_02797at 2941.928 kb on - strand, within ECD_02797at 2941.947 kb on + strand, within ECD_02797at 2941.948 kb on - strand, within ECD_02797at 2941.948 kb on - strand, within ECD_02797at 2941.948 kb on - strand, within ECD_02797

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Per-strain Table

Position Strand Gene LocusTag Fraction Ox4
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2,939,363 - ECD_02795 0.74 -0.9
2,939,370 - ECD_02795 0.74 +2.0
2,939,370 - ECD_02795 0.74 -0.7
2,939,370 - ECD_02795 0.74 -2.4
2,939,370 - ECD_02795 0.74 +1.3
2,939,370 - ECD_02795 0.74 -2.0
2,939,466 + ECD_02795 0.79 +2.7
2,939,467 - ECD_02795 0.79 +1.8
2,939,472 + ECD_02795 0.79 +0.4
2,939,473 - ECD_02795 0.79 +2.4
2,939,473 - ECD_02795 0.79 -0.0
2,939,536 - ECD_02795 0.82 -0.3
2,939,594 + ECD_02795 0.85 -0.6
2,939,714 - -0.2
2,939,714 - -0.1
2,939,770 - +2.0
2,939,842 - -0.7
2,939,842 - +0.5
2,939,872 - -1.5
2,939,908 - +2.2
2,939,908 - -0.9
2,939,948 + -0.2
2,939,948 + +2.5
2,939,948 + +1.7
2,939,949 - -0.7
2,939,949 - -0.5
2,939,949 - +2.6
2,939,949 - -0.3
2,939,949 - -0.9
2,939,988 + -1.0
2,939,988 + -0.1
2,940,031 - +2.9
2,940,031 - -2.5
2,940,053 + +1.7
2,940,145 + +3.0
2,940,145 + -1.0
2,940,145 + -0.7
2,940,146 - -0.2
2,940,146 - -1.3
2,940,146 - -0.5
2,940,146 - -1.6
2,940,176 + +0.6
2,940,279 + -0.5
2,940,295 + +0.2
2,940,332 + +0.5
2,940,333 - -0.4
2,940,349 + -0.1
2,940,349 + -0.4
2,940,350 - -0.2
2,940,402 - ECD_02796 0.12 -0.9
2,940,458 - ECD_02796 0.20 +1.5
2,940,497 - ECD_02796 0.26 -0.9
2,940,596 + ECD_02796 0.40 -0.4
2,940,596 + ECD_02796 0.40 -0.8
2,940,596 + ECD_02796 0.40 -1.3
2,940,597 - ECD_02796 0.40 -0.5
2,940,597 - ECD_02796 0.40 -2.1
2,940,597 - ECD_02796 0.40 +3.0
2,940,620 + ECD_02796 0.43 -0.2
2,940,630 + ECD_02796 0.44 -2.8
2,940,630 + ECD_02796 0.44 +2.0
2,940,630 + ECD_02796 0.44 +0.5
2,940,631 - ECD_02796 0.45 -0.8
2,940,641 + ECD_02796 0.46 +2.2
2,940,642 - ECD_02796 0.46 +3.0
2,940,714 - ECD_02796 0.56 +0.1
2,940,805 + ECD_02796 0.69 -0.7
2,940,847 + ECD_02796 0.75 -0.0
2,940,850 + ECD_02796 0.76 -1.1
2,940,922 + ECD_02796 0.86 +0.0
2,940,938 + ECD_02796 0.88 -1.1
2,941,052 + -0.9
2,941,052 + -0.2
2,941,053 - -1.6
2,941,071 + +0.2
2,941,288 - -0.1
2,941,335 + -1.1
2,941,345 + -1.7
2,941,347 + -0.6
2,941,348 - +0.1
2,941,401 - -1.2
2,941,453 - -0.6
2,941,490 - -1.8
2,941,490 - -1.8
2,941,500 - -0.7
2,941,530 - -0.5
2,941,566 + ECD_02797 0.10 +1.4
2,941,700 + ECD_02797 0.25 -0.2
2,941,700 + ECD_02797 0.25 -1.6
2,941,701 - ECD_02797 0.25 -2.1
2,941,912 + ECD_02797 0.49 -0.6
2,941,913 - ECD_02797 0.49 -1.3
2,941,920 + ECD_02797 0.50 +0.6
2,941,927 + ECD_02797 0.51 -0.3
2,941,928 - ECD_02797 0.51 -0.4
2,941,947 + ECD_02797 0.53 -0.2
2,941,948 - ECD_02797 0.53 -0.8
2,941,948 - ECD_02797 0.53 -1.7
2,941,948 - ECD_02797 0.53 -0.4

Or see this region's nucleotide sequence