Experiment: Ox4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02775 and ECD_02776 are separated by 79 nucleotides ECD_02776 and ECD_02777 are separated by 12 nucleotides ECD_02777 and ECD_02778 are separated by 108 nucleotides ECD_02778 and ECD_02779 overlap by 1 nucleotides
ECD_02775: ECD_02775 - DNA-specific endonuclease I, at 2,921,205 to 2,921,912
_02775
ECD_02776: ECD_02776 - 16S rRNA m(3)U1498 methyltransferase, SAM-dependent, at 2,921,992 to 2,922,723
_02776
ECD_02777: ECD_02777 - glutathione synthetase, at 2,922,736 to 2,923,686
_02777
ECD_02778: ECD_02778 - uncharacterized protein, at 2,923,795 to 2,924,358
_02778
ECD_02779: ECD_02779 - putative Holliday junction resolvase, at 2,924,358 to 2,924,774
_02779
Position (kb)
2922
2923
2924 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2921.736 kb on + strand, within ECD_02775 at 2921.736 kb on + strand, within ECD_02775 at 2921.736 kb on + strand, within ECD_02775 at 2921.736 kb on + strand, within ECD_02775 at 2921.736 kb on + strand, within ECD_02775 at 2921.736 kb on + strand, within ECD_02775 at 2921.737 kb on - strand, within ECD_02775 at 2921.737 kb on - strand, within ECD_02775 at 2921.737 kb on - strand, within ECD_02775 at 2921.739 kb on - strand, within ECD_02775 at 2921.739 kb on - strand, within ECD_02775 at 2921.751 kb on + strand, within ECD_02775 at 2921.808 kb on + strand, within ECD_02775 at 2921.870 kb on + strand at 2921.910 kb on + strand at 2921.911 kb on - strand at 2921.911 kb on - strand at 2921.915 kb on + strand at 2921.916 kb on - strand at 2921.916 kb on - strand at 2921.916 kb on - strand at 2921.916 kb on - strand at 2921.916 kb on - strand at 2921.916 kb on - strand at 2921.916 kb on - strand at 2921.916 kb on - strand at 2921.916 kb on - strand at 2921.956 kb on + strand at 2921.957 kb on - strand at 2921.957 kb on - strand at 2921.987 kb on + strand at 2921.991 kb on + strand at 2921.991 kb on + strand at 2921.991 kb on + strand at 2921.992 kb on - strand at 2921.992 kb on - strand at 2921.992 kb on - strand at 2922.010 kb on + strand at 2922.010 kb on + strand at 2922.010 kb on + strand at 2922.010 kb on + strand at 2922.010 kb on + strand at 2922.011 kb on - strand at 2922.084 kb on - strand, within ECD_02776 at 2922.084 kb on - strand, within ECD_02776 at 2922.153 kb on + strand, within ECD_02776 at 2922.228 kb on + strand, within ECD_02776 at 2922.229 kb on - strand, within ECD_02776 at 2922.229 kb on - strand, within ECD_02776 at 2922.302 kb on + strand, within ECD_02776 at 2922.302 kb on + strand, within ECD_02776 at 2922.302 kb on + strand, within ECD_02776 at 2922.302 kb on + strand, within ECD_02776 at 2922.342 kb on + strand, within ECD_02776 at 2922.343 kb on - strand, within ECD_02776 at 2922.531 kb on + strand, within ECD_02776 at 2922.531 kb on + strand, within ECD_02776 at 2922.531 kb on + strand, within ECD_02776 at 2922.531 kb on + strand, within ECD_02776 at 2922.531 kb on + strand, within ECD_02776 at 2922.531 kb on + strand, within ECD_02776 at 2922.531 kb on + strand, within ECD_02776 at 2922.531 kb on + strand, within ECD_02776 at 2922.532 kb on - strand, within ECD_02776 at 2922.532 kb on - strand, within ECD_02776 at 2922.532 kb on - strand, within ECD_02776 at 2922.701 kb on + strand at 2922.702 kb on - strand at 2922.702 kb on - strand at 2922.805 kb on - strand at 2922.844 kb on + strand, within ECD_02777 at 2922.844 kb on + strand, within ECD_02777 at 2922.845 kb on - strand, within ECD_02777 at 2922.846 kb on + strand, within ECD_02777 at 2922.846 kb on + strand, within ECD_02777 at 2922.847 kb on - strand, within ECD_02777 at 2922.847 kb on - strand, within ECD_02777 at 2922.922 kb on + strand, within ECD_02777 at 2922.922 kb on + strand, within ECD_02777 at 2922.993 kb on + strand, within ECD_02777 at 2923.020 kb on + strand, within ECD_02777 at 2923.020 kb on + strand, within ECD_02777 at 2923.024 kb on + strand, within ECD_02777 at 2923.024 kb on + strand, within ECD_02777 at 2923.025 kb on - strand, within ECD_02777 at 2923.033 kb on + strand, within ECD_02777 at 2923.034 kb on - strand, within ECD_02777 at 2923.034 kb on - strand, within ECD_02777 at 2923.035 kb on + strand, within ECD_02777 at 2923.075 kb on - strand, within ECD_02777 at 2923.175 kb on + strand, within ECD_02777 at 2923.212 kb on + strand, within ECD_02777 at 2923.212 kb on + strand, within ECD_02777 at 2923.396 kb on + strand, within ECD_02777 at 2923.673 kb on + strand at 2923.748 kb on + strand at 2923.818 kb on + strand at 2923.867 kb on + strand, within ECD_02778 at 2923.881 kb on + strand, within ECD_02778 at 2923.881 kb on + strand, within ECD_02778 at 2923.881 kb on + strand, within ECD_02778 at 2923.884 kb on + strand, within ECD_02778 at 2924.165 kb on + strand, within ECD_02778 at 2924.259 kb on + strand, within ECD_02778 at 2924.371 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ox4 remove 2,921,736 + ECD_02775 0.75 -0.7 2,921,736 + ECD_02775 0.75 -0.5 2,921,736 + ECD_02775 0.75 -2.5 2,921,736 + ECD_02775 0.75 +0.3 2,921,736 + ECD_02775 0.75 -1.1 2,921,736 + ECD_02775 0.75 -0.9 2,921,737 - ECD_02775 0.75 +1.6 2,921,737 - ECD_02775 0.75 -0.8 2,921,737 - ECD_02775 0.75 +1.1 2,921,739 - ECD_02775 0.75 -0.0 2,921,739 - ECD_02775 0.75 +0.9 2,921,751 + ECD_02775 0.77 +2.6 2,921,808 + ECD_02775 0.85 +0.5 2,921,870 + -1.1 2,921,910 + -0.2 2,921,911 - -0.8 2,921,911 - -0.3 2,921,915 + -1.1 2,921,916 - -0.2 2,921,916 - +2.6 2,921,916 - -0.0 2,921,916 - +2.9 2,921,916 - -0.5 2,921,916 - -0.2 2,921,916 - -0.7 2,921,916 - +2.1 2,921,916 - +0.7 2,921,956 + -1.3 2,921,957 - -0.9 2,921,957 - -0.3 2,921,987 + -0.9 2,921,991 + -0.8 2,921,991 + -0.9 2,921,991 + +1.0 2,921,992 - -0.6 2,921,992 - -0.7 2,921,992 - -1.2 2,922,010 + -1.2 2,922,010 + +1.7 2,922,010 + +0.0 2,922,010 + +1.3 2,922,010 + +2.2 2,922,011 - +2.5 2,922,084 - ECD_02776 0.13 +3.2 2,922,084 - ECD_02776 0.13 +1.3 2,922,153 + ECD_02776 0.22 +1.1 2,922,228 + ECD_02776 0.32 -0.6 2,922,229 - ECD_02776 0.32 +2.4 2,922,229 - ECD_02776 0.32 +1.6 2,922,302 + ECD_02776 0.42 -1.2 2,922,302 + ECD_02776 0.42 -0.4 2,922,302 + ECD_02776 0.42 -1.6 2,922,302 + ECD_02776 0.42 -0.8 2,922,342 + ECD_02776 0.48 -2.0 2,922,343 - ECD_02776 0.48 -0.6 2,922,531 + ECD_02776 0.74 -0.2 2,922,531 + ECD_02776 0.74 -0.9 2,922,531 + ECD_02776 0.74 -0.8 2,922,531 + ECD_02776 0.74 -0.7 2,922,531 + ECD_02776 0.74 +1.4 2,922,531 + ECD_02776 0.74 -1.7 2,922,531 + ECD_02776 0.74 +1.0 2,922,531 + ECD_02776 0.74 +0.7 2,922,532 - ECD_02776 0.74 -0.1 2,922,532 - ECD_02776 0.74 -1.8 2,922,532 - ECD_02776 0.74 +2.5 2,922,701 + +2.7 2,922,702 - +3.3 2,922,702 - +0.2 2,922,805 - +0.7 2,922,844 + ECD_02777 0.11 +0.4 2,922,844 + ECD_02777 0.11 +2.9 2,922,845 - ECD_02777 0.11 +3.4 2,922,846 + ECD_02777 0.12 +2.4 2,922,846 + ECD_02777 0.12 +0.8 2,922,847 - ECD_02777 0.12 +2.7 2,922,847 - ECD_02777 0.12 +1.3 2,922,922 + ECD_02777 0.20 +1.8 2,922,922 + ECD_02777 0.20 +1.5 2,922,993 + ECD_02777 0.27 +0.5 2,923,020 + ECD_02777 0.30 +1.8 2,923,020 + ECD_02777 0.30 +1.3 2,923,024 + ECD_02777 0.30 +1.7 2,923,024 + ECD_02777 0.30 +2.3 2,923,025 - ECD_02777 0.30 +1.8 2,923,033 + ECD_02777 0.31 +3.1 2,923,034 - ECD_02777 0.31 +3.2 2,923,034 - ECD_02777 0.31 +2.1 2,923,035 + ECD_02777 0.31 +2.2 2,923,075 - ECD_02777 0.36 +1.5 2,923,175 + ECD_02777 0.46 +2.5 2,923,212 + ECD_02777 0.50 +1.1 2,923,212 + ECD_02777 0.50 +0.8 2,923,396 + ECD_02777 0.69 +3.2 2,923,673 + -1.7 2,923,748 + -0.7 2,923,818 + +0.5 2,923,867 + ECD_02778 0.13 -0.9 2,923,881 + ECD_02778 0.15 -1.3 2,923,881 + ECD_02778 0.15 -0.9 2,923,881 + ECD_02778 0.15 -0.1 2,923,884 + ECD_02778 0.16 -0.2 2,924,165 + ECD_02778 0.66 +2.7 2,924,259 + ECD_02778 0.82 -0.7 2,924,371 + +0.9
Or see this region's nucleotide sequence