Strain Fitness in Escherichia coli BL21 around ECD_02737

Experiment: Ox4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02735 and ECD_02736 are separated by 118 nucleotidesECD_02736 and ECD_02737 are separated by 23 nucleotidesECD_02737 and ECD_02738 are separated by 446 nucleotides ECD_02735: ECD_02735 - glycine decarboxylase, PLP-dependent, subunit P of glycine cleavage complex, at 2,877,027 to 2,879,900 _02735 ECD_02736: ECD_02736 - glycine cleavage complex lipoylprotein, at 2,880,019 to 2,880,408 _02736 ECD_02737: ECD_02737 - aminomethyltransferase, tetrahydrofolate-dependent, subunit (T protein) of glycine cleavage complex, at 2,880,432 to 2,881,526 _02737 ECD_02738: ECD_02738 - 2-octaprenylphenol hydroxylase, FAD-dependent, at 2,881,973 to 2,883,175 _02738 Position (kb) 2880 2881 2882Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2879.503 kb on - strand, within ECD_02735at 2879.576 kb on - strand, within ECD_02735at 2879.601 kb on - strand, within ECD_02735at 2879.601 kb on - strand, within ECD_02735at 2879.650 kb on + strandat 2879.650 kb on + strandat 2879.651 kb on - strandat 2879.651 kb on - strandat 2879.651 kb on - strandat 2879.651 kb on - strandat 2879.666 kb on + strandat 2879.682 kb on - strandat 2879.707 kb on + strandat 2879.754 kb on - strandat 2879.847 kb on - strandat 2879.859 kb on - strandat 2879.887 kb on - strandat 2879.947 kb on + strandat 2880.011 kb on + strandat 2880.011 kb on + strandat 2880.012 kb on - strandat 2880.012 kb on - strandat 2880.032 kb on - strandat 2880.032 kb on - strandat 2880.032 kb on - strandat 2880.045 kb on - strandat 2880.045 kb on - strandat 2880.119 kb on + strand, within ECD_02736at 2880.198 kb on - strand, within ECD_02736at 2880.335 kb on + strand, within ECD_02736at 2880.335 kb on + strand, within ECD_02736at 2880.335 kb on + strand, within ECD_02736at 2880.381 kb on - strandat 2880.381 kb on - strandat 2880.381 kb on - strandat 2880.381 kb on - strandat 2880.398 kb on - strandat 2880.428 kb on + strandat 2880.528 kb on - strandat 2880.560 kb on - strand, within ECD_02737at 2880.581 kb on + strand, within ECD_02737at 2880.627 kb on - strand, within ECD_02737at 2880.627 kb on - strand, within ECD_02737at 2880.695 kb on + strand, within ECD_02737at 2880.821 kb on - strand, within ECD_02737at 2880.821 kb on - strand, within ECD_02737at 2880.879 kb on - strand, within ECD_02737at 2880.961 kb on + strand, within ECD_02737at 2881.046 kb on + strand, within ECD_02737at 2881.047 kb on - strand, within ECD_02737at 2881.047 kb on - strand, within ECD_02737at 2881.047 kb on - strand, within ECD_02737at 2881.188 kb on - strand, within ECD_02737at 2881.223 kb on - strand, within ECD_02737at 2881.239 kb on + strand, within ECD_02737at 2881.373 kb on + strand, within ECD_02737at 2881.373 kb on + strand, within ECD_02737at 2881.373 kb on + strand, within ECD_02737at 2881.373 kb on + strand, within ECD_02737at 2881.374 kb on - strand, within ECD_02737at 2881.374 kb on - strand, within ECD_02737at 2881.374 kb on - strand, within ECD_02737at 2881.403 kb on + strand, within ECD_02737at 2881.403 kb on + strand, within ECD_02737at 2881.404 kb on - strand, within ECD_02737at 2881.404 kb on - strand, within ECD_02737at 2881.408 kb on - strand, within ECD_02737at 2881.438 kb on + strandat 2881.504 kb on + strandat 2881.504 kb on + strandat 2881.505 kb on - strandat 2881.505 kb on - strandat 2881.543 kb on - strandat 2881.543 kb on - strandat 2881.669 kb on - strandat 2881.674 kb on - strandat 2882.128 kb on + strand, within ECD_02738at 2882.184 kb on + strand, within ECD_02738at 2882.184 kb on + strand, within ECD_02738at 2882.185 kb on - strand, within ECD_02738at 2882.257 kb on + strand, within ECD_02738

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Per-strain Table

Position Strand Gene LocusTag Fraction Ox4
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2,879,503 - ECD_02735 0.86 -1.0
2,879,576 - ECD_02735 0.89 -0.4
2,879,601 - ECD_02735 0.90 -1.1
2,879,601 - ECD_02735 0.90 -0.3
2,879,650 + -1.7
2,879,650 + -1.5
2,879,651 - +0.6
2,879,651 - +2.1
2,879,651 - +2.6
2,879,651 - -0.6
2,879,666 + -0.3
2,879,682 - -0.4
2,879,707 + +2.7
2,879,754 - -0.7
2,879,847 - -0.8
2,879,859 - -0.8
2,879,887 - -0.8
2,879,947 + -0.8
2,880,011 + -0.7
2,880,011 + -0.4
2,880,012 - +2.2
2,880,012 - -0.4
2,880,032 - -0.4
2,880,032 - -0.9
2,880,032 - -0.2
2,880,045 - -0.1
2,880,045 - -1.6
2,880,119 + ECD_02736 0.26 -0.6
2,880,198 - ECD_02736 0.46 -0.8
2,880,335 + ECD_02736 0.81 -1.5
2,880,335 + ECD_02736 0.81 -3.6
2,880,335 + ECD_02736 0.81 -0.3
2,880,381 - -0.5
2,880,381 - -0.6
2,880,381 - -0.9
2,880,381 - -1.5
2,880,398 - -0.6
2,880,428 + +1.8
2,880,528 - -0.9
2,880,560 - ECD_02737 0.12 -1.4
2,880,581 + ECD_02737 0.14 -1.7
2,880,627 - ECD_02737 0.18 +0.5
2,880,627 - ECD_02737 0.18 -2.2
2,880,695 + ECD_02737 0.24 +2.0
2,880,821 - ECD_02737 0.36 -1.5
2,880,821 - ECD_02737 0.36 -0.0
2,880,879 - ECD_02737 0.41 -2.0
2,880,961 + ECD_02737 0.48 -1.0
2,881,046 + ECD_02737 0.56 -1.4
2,881,047 - ECD_02737 0.56 -0.7
2,881,047 - ECD_02737 0.56 -1.6
2,881,047 - ECD_02737 0.56 -3.5
2,881,188 - ECD_02737 0.69 -1.0
2,881,223 - ECD_02737 0.72 +0.2
2,881,239 + ECD_02737 0.74 -0.2
2,881,373 + ECD_02737 0.86 -1.2
2,881,373 + ECD_02737 0.86 -0.5
2,881,373 + ECD_02737 0.86 +0.6
2,881,373 + ECD_02737 0.86 -1.3
2,881,374 - ECD_02737 0.86 -0.0
2,881,374 - ECD_02737 0.86 -0.5
2,881,374 - ECD_02737 0.86 -1.6
2,881,403 + ECD_02737 0.89 -0.8
2,881,403 + ECD_02737 0.89 -0.9
2,881,404 - ECD_02737 0.89 -0.1
2,881,404 - ECD_02737 0.89 -1.5
2,881,408 - ECD_02737 0.89 +0.5
2,881,438 + +1.8
2,881,504 + -0.5
2,881,504 + +1.7
2,881,505 - -1.5
2,881,505 - -1.1
2,881,543 - +3.0
2,881,543 - +2.3
2,881,669 - -0.7
2,881,674 - -0.3
2,882,128 + ECD_02738 0.13 +1.8
2,882,184 + ECD_02738 0.18 +0.5
2,882,184 + ECD_02738 0.18 +2.3
2,882,185 - ECD_02738 0.18 +1.2
2,882,257 + ECD_02738 0.24 +1.1

Or see this region's nucleotide sequence