Experiment: Ox4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02735 and ECD_02736 are separated by 118 nucleotides ECD_02736 and ECD_02737 are separated by 23 nucleotides ECD_02737 and ECD_02738 are separated by 446 nucleotides
ECD_02735: ECD_02735 - glycine decarboxylase, PLP-dependent, subunit P of glycine cleavage complex, at 2,877,027 to 2,879,900
_02735
ECD_02736: ECD_02736 - glycine cleavage complex lipoylprotein, at 2,880,019 to 2,880,408
_02736
ECD_02737: ECD_02737 - aminomethyltransferase, tetrahydrofolate-dependent, subunit (T protein) of glycine cleavage complex, at 2,880,432 to 2,881,526
_02737
ECD_02738: ECD_02738 - 2-octaprenylphenol hydroxylase, FAD-dependent, at 2,881,973 to 2,883,175
_02738
Position (kb)
2880
2881
2882 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2879.503 kb on - strand, within ECD_02735 at 2879.576 kb on - strand, within ECD_02735 at 2879.601 kb on - strand, within ECD_02735 at 2879.601 kb on - strand, within ECD_02735 at 2879.650 kb on + strand at 2879.650 kb on + strand at 2879.651 kb on - strand at 2879.651 kb on - strand at 2879.651 kb on - strand at 2879.651 kb on - strand at 2879.666 kb on + strand at 2879.682 kb on - strand at 2879.707 kb on + strand at 2879.754 kb on - strand at 2879.847 kb on - strand at 2879.859 kb on - strand at 2879.887 kb on - strand at 2879.947 kb on + strand at 2880.011 kb on + strand at 2880.011 kb on + strand at 2880.012 kb on - strand at 2880.012 kb on - strand at 2880.032 kb on - strand at 2880.032 kb on - strand at 2880.032 kb on - strand at 2880.045 kb on - strand at 2880.045 kb on - strand at 2880.119 kb on + strand, within ECD_02736 at 2880.198 kb on - strand, within ECD_02736 at 2880.335 kb on + strand, within ECD_02736 at 2880.335 kb on + strand, within ECD_02736 at 2880.335 kb on + strand, within ECD_02736 at 2880.381 kb on - strand at 2880.381 kb on - strand at 2880.381 kb on - strand at 2880.381 kb on - strand at 2880.398 kb on - strand at 2880.428 kb on + strand at 2880.528 kb on - strand at 2880.560 kb on - strand, within ECD_02737 at 2880.581 kb on + strand, within ECD_02737 at 2880.627 kb on - strand, within ECD_02737 at 2880.627 kb on - strand, within ECD_02737 at 2880.695 kb on + strand, within ECD_02737 at 2880.821 kb on - strand, within ECD_02737 at 2880.821 kb on - strand, within ECD_02737 at 2880.879 kb on - strand, within ECD_02737 at 2880.961 kb on + strand, within ECD_02737 at 2881.046 kb on + strand, within ECD_02737 at 2881.047 kb on - strand, within ECD_02737 at 2881.047 kb on - strand, within ECD_02737 at 2881.047 kb on - strand, within ECD_02737 at 2881.188 kb on - strand, within ECD_02737 at 2881.223 kb on - strand, within ECD_02737 at 2881.239 kb on + strand, within ECD_02737 at 2881.373 kb on + strand, within ECD_02737 at 2881.373 kb on + strand, within ECD_02737 at 2881.373 kb on + strand, within ECD_02737 at 2881.373 kb on + strand, within ECD_02737 at 2881.374 kb on - strand, within ECD_02737 at 2881.374 kb on - strand, within ECD_02737 at 2881.374 kb on - strand, within ECD_02737 at 2881.403 kb on + strand, within ECD_02737 at 2881.403 kb on + strand, within ECD_02737 at 2881.404 kb on - strand, within ECD_02737 at 2881.404 kb on - strand, within ECD_02737 at 2881.408 kb on - strand, within ECD_02737 at 2881.438 kb on + strand at 2881.504 kb on + strand at 2881.504 kb on + strand at 2881.505 kb on - strand at 2881.505 kb on - strand at 2881.543 kb on - strand at 2881.543 kb on - strand at 2881.669 kb on - strand at 2881.674 kb on - strand at 2882.128 kb on + strand, within ECD_02738 at 2882.184 kb on + strand, within ECD_02738 at 2882.184 kb on + strand, within ECD_02738 at 2882.185 kb on - strand, within ECD_02738 at 2882.257 kb on + strand, within ECD_02738
Per-strain Table
Position Strand Gene LocusTag Fraction Ox4 remove 2,879,503 - ECD_02735 0.86 -1.0 2,879,576 - ECD_02735 0.89 -0.4 2,879,601 - ECD_02735 0.90 -1.1 2,879,601 - ECD_02735 0.90 -0.3 2,879,650 + -1.7 2,879,650 + -1.5 2,879,651 - +0.6 2,879,651 - +2.1 2,879,651 - +2.6 2,879,651 - -0.6 2,879,666 + -0.3 2,879,682 - -0.4 2,879,707 + +2.7 2,879,754 - -0.7 2,879,847 - -0.8 2,879,859 - -0.8 2,879,887 - -0.8 2,879,947 + -0.8 2,880,011 + -0.7 2,880,011 + -0.4 2,880,012 - +2.2 2,880,012 - -0.4 2,880,032 - -0.4 2,880,032 - -0.9 2,880,032 - -0.2 2,880,045 - -0.1 2,880,045 - -1.6 2,880,119 + ECD_02736 0.26 -0.6 2,880,198 - ECD_02736 0.46 -0.8 2,880,335 + ECD_02736 0.81 -1.5 2,880,335 + ECD_02736 0.81 -3.6 2,880,335 + ECD_02736 0.81 -0.3 2,880,381 - -0.5 2,880,381 - -0.6 2,880,381 - -0.9 2,880,381 - -1.5 2,880,398 - -0.6 2,880,428 + +1.8 2,880,528 - -0.9 2,880,560 - ECD_02737 0.12 -1.4 2,880,581 + ECD_02737 0.14 -1.7 2,880,627 - ECD_02737 0.18 +0.5 2,880,627 - ECD_02737 0.18 -2.2 2,880,695 + ECD_02737 0.24 +2.0 2,880,821 - ECD_02737 0.36 -1.5 2,880,821 - ECD_02737 0.36 -0.0 2,880,879 - ECD_02737 0.41 -2.0 2,880,961 + ECD_02737 0.48 -1.0 2,881,046 + ECD_02737 0.56 -1.4 2,881,047 - ECD_02737 0.56 -0.7 2,881,047 - ECD_02737 0.56 -1.6 2,881,047 - ECD_02737 0.56 -3.5 2,881,188 - ECD_02737 0.69 -1.0 2,881,223 - ECD_02737 0.72 +0.2 2,881,239 + ECD_02737 0.74 -0.2 2,881,373 + ECD_02737 0.86 -1.2 2,881,373 + ECD_02737 0.86 -0.5 2,881,373 + ECD_02737 0.86 +0.6 2,881,373 + ECD_02737 0.86 -1.3 2,881,374 - ECD_02737 0.86 -0.0 2,881,374 - ECD_02737 0.86 -0.5 2,881,374 - ECD_02737 0.86 -1.6 2,881,403 + ECD_02737 0.89 -0.8 2,881,403 + ECD_02737 0.89 -0.9 2,881,404 - ECD_02737 0.89 -0.1 2,881,404 - ECD_02737 0.89 -1.5 2,881,408 - ECD_02737 0.89 +0.5 2,881,438 + +1.8 2,881,504 + -0.5 2,881,504 + +1.7 2,881,505 - -1.5 2,881,505 - -1.1 2,881,543 - +3.0 2,881,543 - +2.3 2,881,669 - -0.7 2,881,674 - -0.3 2,882,128 + ECD_02738 0.13 +1.8 2,882,184 + ECD_02738 0.18 +0.5 2,882,184 + ECD_02738 0.18 +2.3 2,882,185 - ECD_02738 0.18 +1.2 2,882,257 + ECD_02738 0.24 +1.1
Or see this region's nucleotide sequence