Experiment: Ox4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02646 and ECD_02647 overlap by 82 nucleotides ECD_02647 and ECD_02648 are separated by 627 nucleotides ECD_02648 and ECD_02649 are separated by 118 nucleotides
ECD_02646: ECD_02646 - IS1 protein InsB, at 2,765,863 to 2,766,366
_02646
ECD_02647: ECD_02647 - IS1 protein InsA, at 2,766,285 to 2,766,560
_02647
ECD_02648: ECD_02648 - L-fuculose phosphate aldolase, at 2,767,188 to 2,768,132
_02648
ECD_02649: ECD_02649 - L-ribulokinase AraB-like protein, at 2,768,251 to 2,769,879
_02649
Position (kb)
2767
2768
2769 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2766.674 kb on - strand at 2766.690 kb on - strand at 2766.690 kb on - strand at 2766.718 kb on + strand at 2766.718 kb on + strand at 2766.719 kb on - strand at 2766.719 kb on - strand at 2766.897 kb on - strand at 2766.897 kb on - strand at 2768.042 kb on - strand at 2768.069 kb on + strand at 2768.190 kb on + strand at 2768.191 kb on - strand at 2768.202 kb on - strand at 2768.202 kb on - strand at 2768.229 kb on - strand at 2768.229 kb on - strand at 2768.313 kb on + strand at 2768.513 kb on - strand, within ECD_02649 at 2768.560 kb on - strand, within ECD_02649 at 2768.589 kb on + strand, within ECD_02649 at 2768.589 kb on + strand, within ECD_02649 at 2768.589 kb on + strand, within ECD_02649 at 2768.589 kb on + strand, within ECD_02649 at 2768.589 kb on + strand, within ECD_02649 at 2768.590 kb on - strand, within ECD_02649 at 2768.669 kb on - strand, within ECD_02649 at 2768.743 kb on + strand, within ECD_02649 at 2768.974 kb on + strand, within ECD_02649 at 2769.109 kb on - strand, within ECD_02649
Per-strain Table
Position Strand Gene LocusTag Fraction Ox4 remove 2,766,674 - -1.8 2,766,690 - -0.4 2,766,690 - +0.4 2,766,718 + +4.3 2,766,718 + -1.9 2,766,719 - -0.2 2,766,719 - -0.2 2,766,897 - -0.2 2,766,897 - +0.5 2,768,042 - -1.3 2,768,069 + +0.3 2,768,190 + -0.4 2,768,191 - -1.2 2,768,202 - -2.5 2,768,202 - -0.2 2,768,229 - -0.9 2,768,229 - -1.5 2,768,313 + -1.5 2,768,513 - ECD_02649 0.16 -1.0 2,768,560 - ECD_02649 0.19 -1.1 2,768,589 + ECD_02649 0.21 -0.8 2,768,589 + ECD_02649 0.21 -1.3 2,768,589 + ECD_02649 0.21 -0.5 2,768,589 + ECD_02649 0.21 -0.8 2,768,589 + ECD_02649 0.21 -0.2 2,768,590 - ECD_02649 0.21 +0.2 2,768,669 - ECD_02649 0.26 -0.9 2,768,743 + ECD_02649 0.30 -0.8 2,768,974 + ECD_02649 0.44 -1.5 2,769,109 - ECD_02649 0.53 -0.5
Or see this region's nucleotide sequence